Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J34_RS05200 Genome accession   NZ_CP069582
Coordinates   995982..997352 (-) Length   456 a.a.
NCBI ID   WP_046100592.1    Uniprot ID   A0AAJ0JN37
Organism   Staphylococcus carnosus strain FDAARGOS_1204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990982..1002352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J34_RS05185 (I6J34_05185) cysE 992205..992816 (-) 612 WP_235318617.1 serine O-acetyltransferase -
  I6J34_RS05190 (I6J34_05190) gltX 993137..994591 (-) 1455 WP_012664212.1 glutamate--tRNA ligase -
  I6J34_RS05195 (I6J34_05195) - 994893..995951 (-) 1059 WP_046100593.1 PIN/TRAM domain-containing protein -
  I6J34_RS05200 (I6J34_05200) radA 995982..997352 (-) 1371 WP_046100592.1 DNA repair protein RadA Machinery gene
  I6J34_RS05205 (I6J34_05205) - 997615..1000080 (-) 2466 WP_046100591.1 ATP-dependent Clp protease ATP-binding subunit -
  I6J34_RS05210 (I6J34_05210) - 1000092..1001096 (-) 1005 WP_046100590.1 protein arginine kinase -
  I6J34_RS05215 (I6J34_05215) - 1001101..1001487 (-) 387 Protein_1017 UvrB/UvrC motif-containing protein -
  I6J34_RS05220 (I6J34_05220) - 1001644..1002105 (-) 462 WP_012664206.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50295.95 Da        Isoelectric Point: 7.4017

>NTDB_id=535698 I6J34_RS05200 WP_046100592.1 995982..997352(-) (radA) [Staphylococcus carnosus strain FDAARGOS_1204]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKKEAPSGRGMRTREQTAKVTKLNQVQNETTPRIKTSSPEFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIKEAV
KQTEPDLVVVDSIQTIYHPDINSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAILEKKESYLLQQQDAYIKVAGGVRLTEPAVDLALIAAIASSFKDQPVNGMDCYVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPEGIQVIGVTSVHEALDFALMKR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=535698 I6J34_RS05200 WP_046100592.1 995982..997352(-) (radA) [Staphylococcus carnosus strain FDAARGOS_1204]
TTGGCAAAAAAGAAAGTTATTTTTGAATGTATGGCATGTGGCTATCAATCCCCTAAATGGATGGGAAAATGTCCTAATTG
TGGTGCTTGGAACCAAATGGAAGAAATTATTGAGAAAAAAGAAGCGCCAAGTGGAAGAGGCATGCGTACACGAGAACAAA
CAGCAAAAGTTACCAAGCTTAACCAAGTACAAAATGAAACTACACCTCGTATCAAAACGAGTTCCCCTGAATTCGATAGA
GTATTAGGTGGCGGTATTGTACAAGGTTCGCTTGTCTTAATTGGCGGTGATCCTGGTATTGGTAAATCAACATTGCTGTT
GCAAATCTGTTCAGCATTATCACAAAATAAAAAAGTTTTATATATAACAGGTGAGGAATCACTGAACCAAACTAAATTAC
GAGCAGACCGTTTAGATGAAGATTCAAGTAATTTGAATGTGTTTGCAGAAACGGATTTAGAAGTGATTAAAGAAGCGGTC
AAACAGACTGAACCTGATTTAGTCGTAGTAGATTCTATTCAAACAATTTATCATCCGGATATCAACTCTGCGCCGGGTTC
TGTATCGCAAGTACGAGAAAGTACGCAAATTTTAATGGGTATTGCTAAACAAATGAATATTGCGACTTTCATTGTCGGTC
ACGTGACTAAAGAAGGTCAGATTGCAGGTCCGAGATTACTAGAGCACATGGTAGATACTGTATTGTATTTCGAAGGTGAC
GAACATCATGCGTACCGTATTTTACGTGCAGTTAAAAACCGTTTTGGTTCTACCAATGAAATGGGTATTTTCGAAATGAA
ACATAGCGGTTTGAAAGGTGTTAAAAACCCATCGGAAATGTTTTTAGAAGAACGGTCTACTAATGTGGCAGGTTCTACAA
TTGTGCCGACCATGGAAGGTACACGTCCGTTATTGATTGAAGTACAAGCATTAGTAACACCTACAACTTTCAATAACCCG
AGACGAATGGCAACGGGTATTGATCATAACCGTTTAAATTTATTGATGGCTATACTTGAGAAAAAAGAAAGTTACTTACT
GCAGCAGCAAGATGCTTATATCAAAGTAGCAGGCGGAGTGAGACTGACTGAACCGGCTGTTGACTTAGCCCTGATCGCAG
CAATCGCTTCCAGCTTTAAAGACCAACCCGTAAATGGCATGGATTGTTATGTGGGTGAGGTTGGTTTAACAGGTGAAGTG
CGTCGCGTTTCACGTATCGAACAGCGTGTACAAGAAGCCGCAAAACTTGGATTTAAACGTGTGATTATCCCTAAAACCAA
TATCGGTGGTTGGGATTTTCCTGAGGGTATTCAAGTAATTGGTGTAACGAGCGTGCACGAAGCGCTGGATTTCGCATTAA
TGAAACGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

100

0.66
  radA Streptococcus pneumoniae Rx1

60.356

98.465

0.594
  radA Streptococcus pneumoniae D39

60.356

98.465

0.594
  radA Streptococcus pneumoniae R6

60.356

98.465

0.594
  radA Streptococcus pneumoniae TIGR4

60.356

98.465

0.594
  radA Streptococcus mitis NCTC 12261

60.356

98.465

0.594
  radA Streptococcus mitis SK321

60.356

98.465

0.594