Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LG939_RS07580 Genome accession   NZ_CP084738
Coordinates   1592697..1593317 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain RS639     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587697..1598317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG939_RS07550 (LG939_07570) - 1588200..1588958 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  LG939_RS07555 (LG939_07575) adk 1589116..1589784 (-) 669 WP_011002448.1 adenylate kinase -
  LG939_RS07560 (LG939_07580) kdsB 1590104..1590910 (-) 807 WP_020832561.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LG939_RS07565 (LG939_07585) - 1590929..1591117 (-) 189 WP_003266270.1 Trm112 family protein -
  LG939_RS07570 (LG939_07590) lpxK 1591178..1592227 (-) 1050 WP_043897782.1 tetraacyldisaccharide 4'-kinase -
  LG939_RS07575 (LG939_07595) - 1592243..1592674 (-) 432 WP_011002445.1 biopolymer transporter ExbD -
  LG939_RS07580 (LG939_07600) exbB 1592697..1593317 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LG939_RS07585 (LG939_07605) xseA 1594942..1596357 (+) 1416 WP_043897781.1 exodeoxyribonuclease VII large subunit -
  LG939_RS07590 (LG939_07610) sodB 1596503..1597081 (+) 579 WP_011002442.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=535571 LG939_RS07580 WP_011002444.1 1592697..1593317(-) (exbB) [Ralstonia pseudosolanacearum strain RS639]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=535571 LG939_RS07580 WP_011002444.1 1592697..1593317(-) (exbB) [Ralstonia pseudosolanacearum strain RS639]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCAGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGTCAGAACGTCGCCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403