Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6J38_RS05815 Genome accession   NZ_CP069558
Coordinates   1165168..1166091 (-) Length   307 a.a.
NCBI ID   WP_006268357.1    Uniprot ID   F9P7H4
Organism   Streptococcus constellatus strain FDAARGOS_1208     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160168..1171091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J38_RS05800 (I6J38_05800) - 1161733..1163187 (+) 1455 WP_020998023.1 sucrose-6-phosphate hydrolase -
  I6J38_RS05805 (I6J38_05805) - 1163168..1164133 (+) 966 WP_006268416.1 LacI family DNA-binding transcriptional regulator -
  I6J38_RS05810 (I6J38_05810) - 1164203..1165025 (-) 823 Protein_1154 Cof-type HAD-IIB family hydrolase -
  I6J38_RS05815 (I6J38_05815) amiF 1165168..1166091 (-) 924 WP_006268357.1 ATP-binding cassette domain-containing protein Regulator
  I6J38_RS05820 (I6J38_05820) amiE 1166102..1167169 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  I6J38_RS05825 (I6J38_05825) amiD 1167178..1168104 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  I6J38_RS05830 (I6J38_05830) amiC 1168104..1169600 (-) 1497 WP_006268182.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34840.93 Da        Isoelectric Point: 5.9077

>NTDB_id=535525 I6J38_RS05815 WP_006268357.1 1165168..1166091(-) (amiF) [Streptococcus constellatus strain FDAARGOS_1208]
MLEKLVEVKDLEISFGEGSKEFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=535525 I6J38_RS05815 WP_006268357.1 1165168..1166091(-) (amiF) [Streptococcus constellatus strain FDAARGOS_1208]
ATGCTTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGTAAGGAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTG
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTGACCCGCTACCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTTTCTGTGCGCGC
ACAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86