Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A0K_RS02080 Genome accession   NZ_AAQW01000001
Coordinates   439026..439391 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa PACS2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434026..444391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0K_RS02050 pyrR 434648..435160 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  A0K_RS02055 ruvX 435272..435706 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  A0K_RS02060 - 435706..436275 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  A0K_RS02065 - 436324..437217 (-) 894 WP_003162015.1 energy transducer TonB -
  A0K_RS02070 gshB 437364..438317 (-) 954 WP_009875724.1 glutathione synthase -
  A0K_RS02075 pilG 438572..438979 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  A0K_RS02080 pilH 439026..439391 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  A0K_RS02085 - 439442..439978 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  A0K_RS02090 pilJ 440063..442111 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  A0K_RS02095 pilK 442172..443047 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=53548 A0K_RS02080 WP_003084587.1 439026..439391(+) (pilH) [Pseudomonas aeruginosa PACS2]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=53548 A0K_RS02080 WP_003084587.1 439026..439391(+) (pilH) [Pseudomonas aeruginosa PACS2]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364