Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6J44_RS04335 Genome accession   NZ_CP069537
Coordinates   890313..890639 (+) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 885313..895639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS04310 (I6J44_04310) hemC 885928..886845 (+) 918 WP_057082133.1 hydroxymethylbilane synthase -
  I6J44_RS04315 (I6J44_04315) hemD 886849..887616 (+) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  I6J44_RS04320 (I6J44_04320) - 887625..888467 (+) 843 WP_002121187.1 hypothetical protein -
  I6J44_RS04325 (I6J44_04325) - 888477..889670 (+) 1194 WP_002121267.1 hypothetical protein -
  I6J44_RS04330 (I6J44_04330) - 889678..890118 (+) 441 WP_002121251.1 acyl-CoA thioesterase -
  I6J44_RS04335 (I6J44_04335) hns 890313..890639 (+) 327 WP_002121134.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6J44_RS04340 (I6J44_04340) gspN 890974..891717 (+) 744 WP_002121195.1 type II secretion system protein N -
  I6J44_RS04345 (I6J44_04345) - 891717..892553 (+) 837 WP_002121214.1 type II secretion system protein N -
  I6J44_RS04350 (I6J44_04350) gspD 892595..894871 (+) 2277 WP_002121232.1 type II secretion system secretin GspD -
  I6J44_RS04355 (I6J44_04355) - 894912..895538 (+) 627 WP_002121153.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=535428 I6J44_RS04335 WP_002121134.1 890313..890639(+) (hns) [Acinetobacter pittii strain FDAARGOS_1214]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=535428 I6J44_RS04335 WP_002121134.1 890313..890639(+) (hns) [Acinetobacter pittii strain FDAARGOS_1214]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991