Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6J44_RS01180 Genome accession   NZ_CP069537
Coordinates   220747..221274 (-) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 215747..226274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01160 (I6J44_01160) - 215941..216810 (-) 870 WP_002117066.1 hypothetical protein -
  I6J44_RS01165 (I6J44_01165) aroB 216827..217909 (-) 1083 WP_002116776.1 3-dehydroquinate synthase -
  I6J44_RS01170 (I6J44_01170) aroK 217938..218507 (-) 570 WP_002116987.1 shikimate kinase AroK -
  I6J44_RS01175 (I6J44_01175) pilQ 218519..220684 (-) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  I6J44_RS01180 (I6J44_01180) pilP 220747..221274 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  I6J44_RS01185 (I6J44_01185) pilO 221285..222037 (-) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J44_RS01190 (I6J44_01190) pilN 222034..222675 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  I6J44_RS01195 (I6J44_01195) pilM 222675..223733 (-) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=535415 I6J44_RS01180 WP_002116864.1 220747..221274(-) (pilP) [Acinetobacter pittii strain FDAARGOS_1214]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=535415 I6J44_RS01180 WP_002116864.1 220747..221274(-) (pilP) [Acinetobacter pittii strain FDAARGOS_1214]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTACAGGTAGGGAATTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTTCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709