Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | I6J49_RS12670 | Genome accession | NZ_CP069532 |
| Coordinates | 3173312..3174679 (-) | Length | 455 a.a. |
| NCBI ID | WP_005677094.1 | Uniprot ID | - |
| Organism | Bacteroides caccae strain FDAARGOS_1219 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3150930..3200069 | 3173312..3174679 | within | 0 |
Gene organization within MGE regions
Location: 3150930..3200069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J49_RS12565 (I6J49_12570) | - | 3151829..3153061 (+) | 1233 | WP_005677070.1 | site-specific integrase | - |
| I6J49_RS18500 | - | 3153084..3153475 (+) | 392 | Protein_2457 | hypothetical protein | - |
| I6J49_RS12580 (I6J49_12585) | - | 3153545..3153961 (-) | 417 | WP_157448285.1 | hypothetical protein | - |
| I6J49_RS12585 (I6J49_12590) | mobV | 3154171..3155115 (+) | 945 | WP_005677073.1 | MobV family relaxase | - |
| I6J49_RS12590 (I6J49_12595) | hxsD | 3155445..3155777 (+) | 333 | WP_005677074.1 | His-Xaa-Ser system protein HxsD | - |
| I6J49_RS12595 (I6J49_12600) | hxsB | 3155784..3157208 (+) | 1425 | WP_005677076.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| I6J49_RS12600 (I6J49_12605) | hxsC | 3157216..3158358 (+) | 1143 | WP_005677077.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| I6J49_RS12605 (I6J49_12610) | hxsA2 | 3158395..3158652 (+) | 258 | WP_081447299.1 | His-Xaa-Ser repeat protein HxsA2 | - |
| I6J49_RS12610 (I6J49_12615) | - | 3158689..3159315 (-) | 627 | WP_005677078.1 | hypothetical protein | - |
| I6J49_RS12615 (I6J49_12620) | - | 3159299..3159862 (-) | 564 | WP_005677079.1 | hypothetical protein | - |
| I6J49_RS12620 (I6J49_12625) | - | 3159864..3160604 (-) | 741 | WP_005677080.1 | TIGR04255 family protein | - |
| I6J49_RS12625 (I6J49_12630) | rpe | 3160883..3161533 (+) | 651 | WP_005677081.1 | ribulose-phosphate 3-epimerase | - |
| I6J49_RS12630 (I6J49_12635) | - | 3161537..3163666 (+) | 2130 | WP_032837524.1 | ComEC/Rec2 family competence protein | - |
| I6J49_RS12635 (I6J49_12640) | - | 3163713..3164750 (+) | 1038 | WP_005677086.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| I6J49_RS12640 (I6J49_12645) | - | 3164869..3165522 (+) | 654 | WP_005677087.1 | DUF4827 domain-containing protein | - |
| I6J49_RS12645 (I6J49_12650) | glmM | 3165559..3166950 (+) | 1392 | WP_005677088.1 | phosphoglucosamine mutase | - |
| I6J49_RS12650 (I6J49_12655) | - | 3167062..3169440 (-) | 2379 | WP_005677089.1 | TonB-dependent receptor | - |
| I6J49_RS12655 (I6J49_12660) | - | 3169630..3170964 (+) | 1335 | WP_005677090.1 | WD40-like domain containing protein | - |
| I6J49_RS12660 (I6J49_12665) | - | 3170984..3171586 (-) | 603 | WP_005677091.1 | response regulator transcription factor | - |
| I6J49_RS12665 (I6J49_12670) | - | 3171593..3173254 (-) | 1662 | WP_005677092.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| I6J49_RS12670 (I6J49_12675) | radA | 3173312..3174679 (-) | 1368 | WP_005677094.1 | DNA repair protein RadA | Machinery gene |
| I6J49_RS12675 (I6J49_12680) | - | 3174900..3175732 (-) | 833 | Protein_2477 | asparaginase domain-containing protein | - |
| I6J49_RS12680 (I6J49_12685) | thrA | 3176062..3178503 (+) | 2442 | WP_005677099.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
| I6J49_RS12685 (I6J49_12690) | - | 3178510..3179718 (+) | 1209 | WP_005677100.1 | cofactor-independent phosphoglycerate mutase | - |
| I6J49_RS12690 (I6J49_12695) | thrC | 3179732..3181033 (+) | 1302 | WP_005677101.1 | threonine synthase | - |
| I6J49_RS12695 (I6J49_12700) | - | 3181210..3181836 (-) | 627 | WP_005677102.1 | thiamine diphosphokinase | - |
| I6J49_RS12700 (I6J49_12705) | pnuC | 3181833..3182438 (-) | 606 | WP_005677103.1 | nicotinamide riboside transporter PnuC | - |
| I6J49_RS12705 (I6J49_12710) | - | 3182454..3184706 (-) | 2253 | WP_005677104.1 | TonB-dependent receptor | - |
| I6J49_RS12710 (I6J49_12715) | - | 3184931..3185842 (+) | 912 | WP_005677106.1 | mechanosensitive ion channel family protein | - |
| I6J49_RS12715 (I6J49_12720) | - | 3185945..3186184 (-) | 240 | WP_005677108.1 | hypothetical protein | - |
| I6J49_RS12720 (I6J49_12725) | - | 3186251..3187537 (-) | 1287 | WP_005677109.1 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein | - |
| I6J49_RS12725 (I6J49_12730) | - | 3187715..3188185 (+) | 471 | WP_005677110.1 | Lrp/AsnC family transcriptional regulator | - |
| I6J49_RS12730 (I6J49_12735) | - | 3188315..3189115 (+) | 801 | WP_005679844.1 | IclR family transcriptional regulator | - |
| I6J49_RS12735 (I6J49_12740) | - | 3189148..3190905 (+) | 1758 | WP_005677112.1 | YncE family protein | - |
| I6J49_RS12740 (I6J49_12745) | - | 3190917..3192011 (+) | 1095 | WP_032855108.1 | endoribonuclease L-PSP | - |
| I6J49_RS12745 (I6J49_12750) | - | 3192047..3192616 (+) | 570 | Protein_2491 | hypothetical protein | - |
| I6J49_RS12750 (I6J49_12755) | - | 3192613..3196026 (+) | 3414 | WP_089421559.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| I6J49_RS12755 (I6J49_12760) | ccsA | 3196039..3198453 (+) | 2415 | WP_005677118.1 | cytochrome c biogenesis protein CcsA | - |
| I6J49_RS12760 (I6J49_12765) | - | 3198475..3199359 (+) | 885 | WP_005677119.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 50147.95 Da Isoelectric Point: 6.4039
>NTDB_id=535369 I6J49_RS12670 WP_005677094.1 3173312..3174679(-) (radA) [Bacteroides caccae strain FDAARGOS_1219]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPVNRRPVSGIETQKPKPVILSEIIADDEPRINMHDNELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPEKKILYVSGEESARQLKLRADRLSEVSSDCFIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTETIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPVNRRPVSGIETQKPKPVILSEIIADDEPRINMHDNELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPEKKILYVSGEESARQLKLRADRLSEVSSDCFIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTETIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=535369 I6J49_RS12670 WP_005677094.1 3173312..3174679(-) (radA) [Bacteroides caccae strain FDAARGOS_1219]
ATGGCTAAAGAAAAGACCGTATATGTGTGTAGTAACTGCGGACAGGATTCACCGAAATGGGTAGGCAAATGTCCGTCGTG
CGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAGCCGGTTAACCGCCGGCCGGTATCGGGCATAGAAACGC
AAAAGCCCAAGCCGGTTATTCTTAGTGAGATCATAGCGGACGATGAACCGCGAATCAATATGCATGATAATGAACTGAAC
CGCGTACTGGGCGGCGGACTTGTTCCGGGTTCTTTAGTACTGATCGGCGGCGAACCGGGAATCGGAAAATCAACTCTCGT
CATGCAAACCGTACTCCGTATGCCGGAAAAGAAAATCCTTTATGTATCCGGCGAGGAAAGTGCACGGCAATTAAAATTAC
GTGCCGACCGTCTTTCTGAGGTTTCCAGCGACTGCTTCATTGTTTGTGAGACTTCCCTTGAACAGATTTATGTCCATATC
AAAAATACGAATCCGGATTTGGTTATTATCGACTCCATACAGACTATCTCTACGGAAACCATCGAATCGTCTCCCGGAAG
TATCGCTCAGGTCAGAGAGTGTTCGGCATCTATCCTACGTTTCGCAAAGGAGACTCATACGCCGGTCTTGCTTATCGGAC
ATATAAATAAAGAAGGGAGCATTGCAGGCCCCAAGGTGCTGGAACATATCGTTGATACAGTTCTCCAATTTGAAGGTGAC
CAACATTATATGTACCGTATTTTACGCAGTATCAAGAATCGCTTCGGTAGTACGGCCGAACTGGGTATTTATGAGATGCG
GCAGGACGGGCTACGCCAGGTGAGCAATCCTTCGGAACTACTGCTTAGCCAAGACCATGAAGGAATGAGCGGAGTAGCAA
TCGCTTCTGCTATCGAAGGAGTACGTCCCTTCCTGATTGAGACTCAGGCTCTGGTAAGCTCCGCTGTTTATGGTAATCCC
CAACGTTCGGCAACCGGATTTGATATACGAAGAATGAATATGCTTCTGGCCGTCCTCGAAAAACGTGTCGGGTTCAAGCT
TGCACAGAAAGATGTATTTCTGAATATCGCCGGAGGACTGAAAGTGAATGACCCGGCCATCGACCTCGCAGTTATCAGTG
CCATTCTTTCTTCAAATATGGATGCAGCTATCGAACCGGAAGTCTGTATGGCAGGAGAAATCGGTTTGTCGGGAGAGATA
CGTCCGGTGAACCGGATTGAACAACGTATCGGAGAGGCCGAGAAGCTTGGCTTCAAGCGTTTCCTGTTGCCCAAATATAA
TTTGCAAGGCATTGATACGAAGAAGCTAAAGATAGAGTTAGTGCCCGTAAGAAAGGTAGAAGAGGCGTTCAGGGCGTTAT
TCGGATAA
ATGGCTAAAGAAAAGACCGTATATGTGTGTAGTAACTGCGGACAGGATTCACCGAAATGGGTAGGCAAATGTCCGTCGTG
CGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAGCCGGTTAACCGCCGGCCGGTATCGGGCATAGAAACGC
AAAAGCCCAAGCCGGTTATTCTTAGTGAGATCATAGCGGACGATGAACCGCGAATCAATATGCATGATAATGAACTGAAC
CGCGTACTGGGCGGCGGACTTGTTCCGGGTTCTTTAGTACTGATCGGCGGCGAACCGGGAATCGGAAAATCAACTCTCGT
CATGCAAACCGTACTCCGTATGCCGGAAAAGAAAATCCTTTATGTATCCGGCGAGGAAAGTGCACGGCAATTAAAATTAC
GTGCCGACCGTCTTTCTGAGGTTTCCAGCGACTGCTTCATTGTTTGTGAGACTTCCCTTGAACAGATTTATGTCCATATC
AAAAATACGAATCCGGATTTGGTTATTATCGACTCCATACAGACTATCTCTACGGAAACCATCGAATCGTCTCCCGGAAG
TATCGCTCAGGTCAGAGAGTGTTCGGCATCTATCCTACGTTTCGCAAAGGAGACTCATACGCCGGTCTTGCTTATCGGAC
ATATAAATAAAGAAGGGAGCATTGCAGGCCCCAAGGTGCTGGAACATATCGTTGATACAGTTCTCCAATTTGAAGGTGAC
CAACATTATATGTACCGTATTTTACGCAGTATCAAGAATCGCTTCGGTAGTACGGCCGAACTGGGTATTTATGAGATGCG
GCAGGACGGGCTACGCCAGGTGAGCAATCCTTCGGAACTACTGCTTAGCCAAGACCATGAAGGAATGAGCGGAGTAGCAA
TCGCTTCTGCTATCGAAGGAGTACGTCCCTTCCTGATTGAGACTCAGGCTCTGGTAAGCTCCGCTGTTTATGGTAATCCC
CAACGTTCGGCAACCGGATTTGATATACGAAGAATGAATATGCTTCTGGCCGTCCTCGAAAAACGTGTCGGGTTCAAGCT
TGCACAGAAAGATGTATTTCTGAATATCGCCGGAGGACTGAAAGTGAATGACCCGGCCATCGACCTCGCAGTTATCAGTG
CCATTCTTTCTTCAAATATGGATGCAGCTATCGAACCGGAAGTCTGTATGGCAGGAGAAATCGGTTTGTCGGGAGAGATA
CGTCCGGTGAACCGGATTGAACAACGTATCGGAGAGGCCGAGAAGCTTGGCTTCAAGCGTTTCCTGTTGCCCAAATATAA
TTTGCAAGGCATTGATACGAAGAAGCTAAAGATAGAGTTAGTGCCCGTAAGAAAGGTAGAAGAGGCGTTCAGGGCGTTAT
TCGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.522 |
100 |
0.521 |
| radA | Streptococcus mitis SK321 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae Rx1 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae D39 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae R6 |
48.132 |
100 |
0.481 |
| radA | Streptococcus pneumoniae TIGR4 |
48.132 |
100 |
0.481 |
| radA | Streptococcus mitis NCTC 12261 |
48.132 |
100 |
0.481 |