Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6J27_RS08160 Genome accession   NZ_CP069514
Coordinates   1722813..1723292 (+) Length   159 a.a.
NCBI ID   WP_049158774.1    Uniprot ID   -
Organism   Corynebacterium striatum strain FDAARGOS_1197     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717813..1728292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J27_RS08145 (I6J27_08145) - 1720643..1721761 (+) 1119 WP_005528996.1 TerC family protein -
  I6J27_RS08150 (I6J27_08150) - 1721870..1722163 (-) 294 WP_046645309.1 YciI family protein -
  I6J27_RS08155 (I6J27_08155) pgsA 1722211..1722813 (+) 603 WP_204083499.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6J27_RS08160 (I6J27_08160) cinA 1722813..1723292 (+) 480 WP_049158774.1 CinA family protein Machinery gene
  I6J27_RS08165 (I6J27_08165) - 1723337..1723708 (+) 372 WP_049063448.1 helix-turn-helix domain-containing protein -
  I6J27_RS08170 (I6J27_08170) - 1723850..1724710 (+) 861 WP_204083500.1 PspA/IM30 family protein -
  I6J27_RS14515 - 1724714..1724842 (-) 129 WP_275042322.1 hypothetical protein -
  I6J27_RS08175 (I6J27_08175) - 1724862..1725476 (-) 615 WP_049192045.1 energy-coupling factor transporter transmembrane component T family protein -
  I6J27_RS08180 (I6J27_08180) - 1725552..1726244 (-) 693 WP_049192048.1 energy-coupling factor ABC transporter ATP-binding protein -
  I6J27_RS08185 (I6J27_08185) - 1726250..1726840 (-) 591 WP_046645313.1 biotin transporter BioY -
  I6J27_RS08190 (I6J27_08190) - 1726987..1727202 (+) 216 WP_046645314.1 DUF3046 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16323.43 Da        Isoelectric Point: 4.5177

>NTDB_id=535244 I6J27_RS08160 WP_049158774.1 1722813..1723292(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1197]
MDSLASQVVETLKRRRETVAFCESLTAGLAAATVATVPGASAVLRGGLVTYATEVKSHFLHVPLEQLEERGVVSAPTAQE
MAVAAARETGADWAVSLTGVAGPDTQEGKPAGTVFVGIVGPSVEPTAIQTEHLSGSRDEIRTGAVAAALSLLLSTLEEN

Nucleotide


Download         Length: 480 bp        

>NTDB_id=535244 I6J27_RS08160 WP_049158774.1 1722813..1723292(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1197]
ATGGATTCTCTGGCTAGCCAAGTAGTTGAAACGCTCAAGCGGCGCCGGGAAACCGTGGCGTTTTGCGAGTCTCTGACTGC
TGGCCTAGCCGCGGCAACCGTGGCCACCGTGCCCGGCGCCTCTGCAGTGTTGCGCGGGGGATTGGTTACCTACGCAACCG
AGGTAAAGTCCCATTTCTTGCACGTTCCTCTGGAGCAGCTGGAGGAACGTGGCGTGGTTTCCGCGCCGACGGCGCAGGAG
ATGGCCGTGGCTGCCGCCCGTGAGACTGGCGCGGATTGGGCGGTCTCGCTAACTGGTGTCGCAGGCCCTGATACTCAGGA
GGGCAAACCCGCGGGCACGGTATTCGTAGGGATTGTGGGCCCCAGCGTTGAACCAACGGCGATTCAGACGGAGCACCTTT
CTGGCTCGCGCGACGAGATTCGAACGGGTGCTGTAGCCGCAGCATTGAGCCTGCTTCTATCAACTTTGGAAGAAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(2-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.677

97.484

0.484
  cinA Streptococcus pneumoniae TIGR4

49.677

97.484

0.484
  cinA Streptococcus pneumoniae Rx1

49.677

97.484

0.484
  cinA Streptococcus pneumoniae R6

49.677

97.484

0.484
  cinA Streptococcus pneumoniae D39

49.677

97.484

0.484
  cinA Streptococcus mitis NCTC 12261

49.677

97.484

0.484
  cinA Streptococcus mutans UA159

45.806

97.484

0.447
  cinA Bacillus subtilis subsp. subtilis str. 168

36.943

98.742

0.365