Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6J88_RS23370 Genome accession   NZ_CP069500
Coordinates   4799726..4800355 (+) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1258     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4794726..4805355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J88_RS23350 (I6J88_23350) ycbZ 4795126..4796886 (-) 1761 WP_000156501.1 Lon protease family protein -
  I6J88_RS23355 (I6J88_23355) matP 4797072..4797524 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  I6J88_RS23360 (I6J88_23360) ompA 4797602..4798642 (-) 1041 WP_001350588.1 porin OmpA -
  I6J88_RS23365 (I6J88_23365) sulA 4798998..4799507 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  I6J88_RS23370 (I6J88_23370) sxy/tfoX 4799726..4800355 (+) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6J88_RS23375 (I6J88_23375) yccS 4800318..4802480 (-) 2163 WP_072197900.1 YccS family putative transporter -
  I6J88_RS23380 (I6J88_23380) yccF 4802490..4802936 (-) 447 WP_001261236.1 YccF domain-containing protein -
  I6J88_RS23385 (I6J88_23385) helD 4803059..4805113 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=535137 I6J88_RS23370 WP_000839144.1 4799726..4800355(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1258]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=535137 I6J88_RS23370 WP_000839144.1 4799726..4800355(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1258]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995