Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6J47_RS15225 Genome accession   NZ_CP069496
Coordinates   3165321..3165962 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3160321..3170962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS15205 (I6J47_15205) - 3160365..3160697 (+) 333 WP_002116981.1 hypothetical protein -
  I6J47_RS15210 (I6J47_15210) rrmA 3160700..3161524 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  I6J47_RS15215 (I6J47_15215) ponA 3161540..3164101 (-) 2562 WP_032052651.1 penicillin-binding protein PBP1a -
  I6J47_RS15220 (I6J47_15220) pilM 3164263..3165321 (+) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  I6J47_RS15225 (I6J47_15225) pilN 3165321..3165962 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  I6J47_RS15230 (I6J47_15230) pilO 3165959..3166711 (+) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J47_RS15235 (I6J47_15235) pilP 3166722..3167249 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  I6J47_RS15240 (I6J47_15240) pilQ 3167312..3169438 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  I6J47_RS15245 (I6J47_15245) aroK 3169450..3170019 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=535097 I6J47_RS15225 WP_002116944.1 3165321..3165962(+) (pilN) [Acinetobacter pittii strain FDAARGOS_1217]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=535097 I6J47_RS15225 WP_002116944.1 3165321..3165962(+) (pilN) [Acinetobacter pittii strain FDAARGOS_1217]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATTATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGTTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGCATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCA
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685