Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6J47_RS12230 Genome accession   NZ_CP069496
Coordinates   2528199..2529767 (+) Length   522 a.a.
NCBI ID   WP_005804055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523199..2534767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS12210 (I6J47_12210) hom 2523691..2524992 (+) 1302 WP_204086957.1 homoserine dehydrogenase -
  I6J47_RS12215 (I6J47_12215) thrC 2525047..2526186 (+) 1140 WP_002048893.1 threonine synthase -
  I6J47_RS12220 (I6J47_12220) pbpG 2526294..2527340 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6J47_RS12225 (I6J47_12225) gacA 2527553..2528188 (+) 636 WP_002121174.1 response regulator -
  I6J47_RS12230 (I6J47_12230) pilS 2528199..2529767 (+) 1569 WP_005804055.1 sensor histidine kinase Regulator
  I6J47_RS12235 (I6J47_12235) pilR 2529791..2531203 (+) 1413 WP_005804053.1 sigma-54-dependent transcriptional regulator Regulator
  I6J47_RS12240 (I6J47_12240) ctpA 2531207..2532391 (-) 1185 WP_002121269.1 S41 family peptidase -
  I6J47_RS12245 (I6J47_12245) gpmI 2532407..2533954 (-) 1548 WP_005804050.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59118.61 Da        Isoelectric Point: 6.4992

>NTDB_id=535088 I6J47_RS12230 WP_005804055.1 2528199..2529767(+) (pilS) [Acinetobacter pittii strain FDAARGOS_1217]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFISTQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYSLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSNAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTHPIQIELNDFIKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=535088 I6J47_RS12230 WP_005804055.1 2528199..2529767(+) (pilS) [Acinetobacter pittii strain FDAARGOS_1217]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTTCAACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCTTTGCTCATAACATTACTTGCAG
TCATTGCGGTTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGTTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATTCTTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAACATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAATCCTCTTGCGGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTAATGCGGAACAGCA
AAACACTTTGCGCAATATGATTGGTAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCCGCA
GTGAAAGAACGCACCCAATCCAGATCGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944