Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6J47_RS12070 Genome accession   NZ_CP069496
Coordinates   2497268..2497594 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2492268..2502594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS12050 (I6J47_12050) - 2492375..2493001 (-) 627 WP_204086950.1 FHA domain-containing protein -
  I6J47_RS12055 (I6J47_12055) gspD 2493042..2495312 (-) 2271 WP_204086951.1 type II secretion system secretin GspD -
  I6J47_RS12060 (I6J47_12060) - 2495354..2496190 (-) 837 WP_078220054.1 type II secretion system protein N -
  I6J47_RS12065 (I6J47_12065) gspN 2496190..2496933 (-) 744 WP_204086952.1 type II secretion system protein N -
  I6J47_RS12070 (I6J47_12070) hns 2497268..2497594 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6J47_RS12075 (I6J47_12075) - 2497789..2498229 (-) 441 WP_017385884.1 acyl-CoA thioesterase -
  I6J47_RS12080 (I6J47_12080) - 2498237..2499430 (-) 1194 WP_204086953.1 heme biosynthesis protein HemY -
  I6J47_RS12085 (I6J47_12085) - 2499440..2500282 (-) 843 WP_174723332.1 hypothetical protein -
  I6J47_RS12090 (I6J47_12090) hemD 2500291..2501058 (-) 768 WP_032052771.1 uroporphyrinogen-III synthase -
  I6J47_RS12095 (I6J47_12095) hemC 2501062..2501979 (-) 918 WP_204086954.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=535086 I6J47_RS12070 WP_000801427.1 2497268..2497594(-) (hns) [Acinetobacter pittii strain FDAARGOS_1217]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=535086 I6J47_RS12070 WP_000801427.1 2497268..2497594(-) (hns) [Acinetobacter pittii strain FDAARGOS_1217]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1