Detailed information NTG0535058

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LFW28_RS15605
• Genome accession: NZ_CP084529
• Coordinates: 3268138..3269163 (-)
• Length: 341 a.a.
• NCBI ID: WP_061066762.1
• Uniprot ID: -
• Organism: Escherichia coli strain Origami2-DE3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3263138..3274163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFW28_RS15575 (LFW28_15575)	zapB	3263222..3263467 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LFW28_RS15580 (LFW28_15580)	rraA	3263552..3264037 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LFW28_RS15585 (LFW28_15585)	menA	3264130..3265056 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LFW28_RS15590 (LFW28_15590)	hslU	3265123..3266454 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LFW28_RS15595 (LFW28_15595)	hslV	3266464..3266994 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LFW28_RS15600 (LFW28_15600)	ftsN	3267087..3268046 (-)	960	WP_000068828.1	cell division protein FtsN	-
LFW28_RS15605 (LFW28_15605)	cytR	3268138..3269163 (-)	1026	WP_061066762.1	DNA-binding transcriptional regulator CytR	Regulator
LFW28_RS15610 (LFW28_15610)	priA	3269319..3271517 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LFW28_RS15615 (LFW28_15615)	rpmE	3271720..3271932 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LFW28_RS15620 (LFW28_15620)	yiiX	3271993..3272601 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LFW28_RS15625 (LFW28_15625)	metJ	3272785..3273102 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37877.82 Da
• Isoelectric Point: 6.1637

>NTDB_id=535058 LFW28_RS15605 WP_061066762.1 3268138..3269163(-) (cytR) [Escherichia coli strain Origami2-DE3]
MKAKKQETAATMKDVALKEKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=535058 LFW28_RS15605 WP_061066762.1 3268138..3269163(-) (cytR) [Escherichia coli strain Origami2-DE3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGAAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625