Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J37_RS03870 Genome accession   NZ_CP069486
Coordinates   762694..764064 (-) Length   456 a.a.
NCBI ID   WP_103322210.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757694..769064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J37_RS03845 (I6J37_03845) cysE 758086..758727 (-) 642 WP_016911169.1 serine O-acetyltransferase -
  I6J37_RS03850 (I6J37_03850) gltX 758983..760437 (-) 1455 WP_016911170.1 glutamate--tRNA ligase -
  I6J37_RS03855 (I6J37_03855) ispF 760453..760932 (-) 480 WP_103322209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I6J37_RS03860 (I6J37_03860) ispD 760925..761611 (-) 687 WP_016911172.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6J37_RS03865 (I6J37_03865) - 761613..762671 (-) 1059 WP_016911173.1 PIN/TRAM domain-containing protein -
  I6J37_RS03870 (I6J37_03870) radA 762694..764064 (-) 1371 WP_103322210.1 DNA repair protein RadA Machinery gene
  I6J37_RS03875 (I6J37_03875) - 764220..766682 (-) 2463 WP_016911175.1 ATP-dependent Clp protease ATP-binding subunit -
  I6J37_RS03880 (I6J37_03880) - 766701..767705 (-) 1005 WP_016911176.1 protein arginine kinase -
  I6J37_RS03885 (I6J37_03885) - 767706..768242 (-) 537 WP_016911177.1 UvrB/UvrC motif-containing protein -
  I6J37_RS03890 (I6J37_03890) - 768257..768718 (-) 462 WP_016911178.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50460.20 Da        Isoelectric Point: 7.6943

>NTDB_id=535010 I6J37_RS03870 WP_103322210.1 762694..764064(-) (radA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
MAKKKVVFECLACGFQSPKWMGKCSNCGAWNQMEESIEQKETKGPKNTFKSDVPVQKIEKLKDIKEEDTPRIKTKINEFN
RVLGGGVVQGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVKQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVYHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVTNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIIIAIASSFQDKPTKGDDCYVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKLAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=535010 I6J37_RS03870 WP_103322210.1 762694..764064(-) (radA) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
ATGGCAAAAAAGAAAGTAGTATTTGAATGTTTAGCCTGCGGATTTCAATCTCCTAAATGGATGGGTAAATGCTCAAATTG
TGGTGCGTGGAATCAAATGGAAGAATCTATTGAACAAAAAGAAACTAAAGGACCTAAAAATACATTTAAGTCAGATGTTC
CAGTTCAAAAAATAGAAAAATTAAAAGATATTAAAGAAGAAGATACACCTAGAATAAAAACTAAAATTAATGAATTTAAC
CGTGTCTTAGGTGGGGGAGTCGTACAAGGTTCACTTGTATTAATAGGTGGAGACCCCGGAATTGGGAAATCTACATTACT
ATTACAAATATGTGCGGCACTATCCCAACAAAAGAATGTGTTATATGTATCAGGTGAAGAATCGGTAAAACAAACTAAAC
TAAGAGCAGAGCGTTTAGTTGAAGATTCTGGAGAATTAAATGTATATGCAGAAACGAATTTAGAGATTATACACAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTTATCGATTCTATTCAAACTGTTTATCATCCAGAAGTTACATCTGCGCCAGG
TTCAGTTTCTCAAGTGAGAGAATGTACACAAAATTTAATGCACATAGCTAAACAAATGAATATAGCTACATTCATCGTTG
GACATGTAACGAAAGATGGACAAATAGCTGGTCCAAGATTATTAGAACATATGGTAGATACCGTTTTATACTTTGAAGGT
GATACACATCATGCTTATCGTATATTGAGAGCAGTTAAAAACCGTTTTGGTTCAACTAATGAAATGGGTATTTTTGAAAT
GAAACAAACTGGGCTTAATGAAGTAACGAACCCTTCAGAAATGTTTCTCGAAGAAAGAACGAAACATGTGTCTGGTTCGA
CCATTGTTGCGACGATGGAAGGGACAAGACCTATATTAGTTGAAGTCCAAGCACTTGTAACACCTACAACATTCCATAAC
CCACGAAGAATGGCTACAGGTATAGATCATAATAGATTAAGCTTGTTAATGGCCGTACTAGAGAAAAAAGAAAACTTCTT
ATTACAACAGCAAGATGCATATATTAAAATTGCTGGTGGTGTTAAATTGAGCGAGCCTGCTGTAGACTTAAGCATTATCA
TAGCGATAGCTTCAAGTTTCCAAGATAAACCAACTAAAGGTGATGATTGCTACGTTGGTGAAGTTGGTTTGACGGGTGAA
GTAAGAAGGGTAGCAAGAATTGATCAAAGGGTCCAAGAAGCTGCTAAACTCGGATTTAAGCGTATTATTATACCTAAAAA
TAATATTAAAGGTTTAGAATTTCCAGAAGGCACTGAAGTGATTGGTGTATCAACGACAAGAGAAGCATTGAAACTTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.66
  radA Streptococcus pneumoniae Rx1

61.013

99.561

0.607
  radA Streptococcus pneumoniae D39

61.013

99.561

0.607
  radA Streptococcus pneumoniae R6

61.013

99.561

0.607
  radA Streptococcus pneumoniae TIGR4

61.013

99.561

0.607
  radA Streptococcus mitis NCTC 12261

61.013

99.561

0.607
  radA Streptococcus mitis SK321

61.013

99.561

0.607