Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LEL86_RS29530 Genome accession   NZ_CP084357
Coordinates   6871350..6872408 (-) Length   352 a.a.
NCBI ID   WP_093442429.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6866350..6877408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS29510 (LEL86_29510) - 6866391..6867368 (-) 978 WP_225682805.1 ABC transporter permease -
  LEL86_RS29515 (LEL86_29515) - 6867361..6868284 (-) 924 WP_006127343.1 ABC transporter permease -
  LEL86_RS29520 (LEL86_29520) - 6868406..6870043 (-) 1638 WP_225682806.1 peptide ABC transporter substrate-binding protein -
  LEL86_RS29525 (LEL86_29525) - 6870209..6871357 (-) 1149 WP_093442427.1 ABC transporter ATP-binding protein -
  LEL86_RS29530 (LEL86_29530) amiE 6871350..6872408 (-) 1059 WP_093442429.1 ABC transporter ATP-binding protein Regulator
  LEL86_RS29535 (LEL86_29535) - 6872420..6873376 (-) 957 WP_093442432.1 ABC transporter permease -
  LEL86_RS29540 (LEL86_29540) - 6873369..6874298 (-) 930 WP_093442435.1 ABC transporter permease -
  LEL86_RS29545 (LEL86_29545) - 6874427..6876046 (-) 1620 WP_093442437.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38184.07 Da        Isoelectric Point: 6.4135

>NTDB_id=534990 LEL86_RS29530 WP_093442429.1 6871350..6872408(-) (amiE) [Streptomyces sp. WA6-1-16]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGSKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSRKDAKAKSIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
DVPPLAPVTEQDGLELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=534990 LEL86_RS29530 WP_093442429.1 6871350..6872408(-) (amiE) [Streptomyces sp. WA6-1-16]
GTGACCACCATCGACAAGACGGCTCACGTCCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACGCTCGCCGTGCTCGGTGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGCGGCAGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTGCACCAGGGCCTGTCCCGCAAGGACGCCAAGGCCAAGTCCATCGAGCTGATGGACCAGGTCAAG
ATCCCGGCGGCGGCGGCCCGTATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTCCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGGC
TGCCGCCCAACCTGACGCGTATCCCCGCGGGCTGTGCCTTCAGCCCGCGCTGCCCCAAGGCACAGGACATCTGCCGCACG
GACGTCCCGCCGCTCGCCCCGGTGACCGAGCAGGACGGCCTTGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.485

87.784

0.443
  amiE Streptococcus thermophilus LMG 18311

49.838

87.784

0.437
  amiE Streptococcus thermophilus LMD-9

49.838

87.784

0.437
  oppD Streptococcus mutans UA159

47.727

87.5

0.418