Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LEL86_RS29505 Genome accession   NZ_CP084357
Coordinates   6865400..6866377 (-) Length   325 a.a.
NCBI ID   WP_032763378.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6860400..6871377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS29490 (LEL86_29490) - 6860773..6862899 (+) 2127 WP_225682803.1 prolyl oligopeptidase family serine peptidase -
  LEL86_RS29495 (LEL86_29495) - 6862939..6863982 (-) 1044 WP_308438326.1 hypothetical protein -
  LEL86_RS29500 (LEL86_29500) - 6864187..6865410 (-) 1224 WP_225682804.1 ABC transporter ATP-binding protein -
  LEL86_RS29505 (LEL86_29505) amiE 6865400..6866377 (-) 978 WP_032763378.1 ABC transporter ATP-binding protein Regulator
  LEL86_RS29510 (LEL86_29510) - 6866391..6867368 (-) 978 WP_225682805.1 ABC transporter permease -
  LEL86_RS29515 (LEL86_29515) - 6867361..6868284 (-) 924 WP_006127343.1 ABC transporter permease -
  LEL86_RS29520 (LEL86_29520) - 6868406..6870043 (-) 1638 WP_225682806.1 peptide ABC transporter substrate-binding protein -
  LEL86_RS29525 (LEL86_29525) - 6870209..6871357 (-) 1149 WP_093442427.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35879.74 Da        Isoelectric Point: 6.6097

>NTDB_id=534989 LEL86_RS29505 WP_032763378.1 6865400..6866377(-) (amiE) [Streptomyces sp. WA6-1-16]
MLLEVRDLYVEFHTREGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKIAGGEILFKDQDLLKLRP
DERRKIRGQEMAMIFQDALSSLNPVLTVGEQLGEMFVVHRGMSRKDAKAKAVELMDRVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGRELYAIKGLPPNLTRIPPGCAFNPRCPMAQDVCRSDVPPLYEVDEQRRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=534989 LEL86_RS29505 WP_032763378.1 6865400..6866377(-) (amiE) [Streptomyces sp. WA6-1-16]
ATGTTGCTCGAAGTGCGCGATCTGTACGTGGAGTTCCACACCCGCGAAGGCGTCGCCAAGGCCGTCAACGGGGTGAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCCGTCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCGCCGGCGGGGAGATCCTCTTCAAGGACCAGGACCTGCTGAAGCTCAGGCCG
GACGAGCGACGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCCCTGTCCTCGCTGAACCCGGTCCTCAC
CGTCGGCGAACAGCTCGGCGAGATGTTCGTCGTGCACCGCGGCATGTCCCGCAAGGACGCCAAGGCCAAGGCGGTCGAAC
TGATGGACCGGGTGCGTATCCCCGCCGCCAAGGAACGCGTCGGCCAGTATCCGCACCAGTTCTCCGGCGGGATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCCCTGGAACCCTCCCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCACAGGTCATGGACCTCCTCGCGGAACTCCAGCGCGAGCTGAACATGGGCCTCATCCTGATCACCCACGACC
TCGGCGTCGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCGTACACCAAGGGCCTCCTCCAGTCGATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCAACCCCCGCTGCCCGATGGCCC
AGGACGTGTGCCGCAGCGATGTGCCGCCGCTCTACGAGGTCGACGAACAGCGCCGCAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.04

98.769

0.465
  amiE Streptococcus thermophilus LMG 18311

46.106

98.769

0.455
  amiE Streptococcus thermophilus LMD-9

46.106

98.769

0.455
  oppD Streptococcus mutans UA159

45.86

96.615

0.443