Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6K02_RS00530 Genome accession   NZ_CP069482
Coordinates   116641..118017 (-) Length   458 a.a.
NCBI ID   WP_006764006.1    Uniprot ID   A0A892I984
Organism   Burkholderia dolosa strain FDAARGOS_1272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111641..123017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K02_RS00510 (I6K02_00510) cls 112057..113505 (+) 1449 WP_006764010.1 cardiolipin synthase -
  I6K02_RS00515 (I6K02_00515) - 113520..113999 (-) 480 WP_006764009.1 glutathione peroxidase -
  I6K02_RS00520 (I6K02_00520) - 114145..116089 (+) 1945 Protein_103 ATP-binding cassette domain-containing protein -
  I6K02_RS00525 (I6K02_00525) - 116230..116496 (-) 267 WP_035972143.1 DUF2866 domain-containing protein -
  I6K02_RS00530 (I6K02_00530) radA 116641..118017 (-) 1377 WP_006764006.1 DNA repair protein RadA Machinery gene
  I6K02_RS00535 (I6K02_00535) alr 118029..119099 (-) 1071 WP_006764005.1 alanine racemase -
  I6K02_RS00540 (I6K02_00540) lplT 119318..120625 (+) 1308 WP_006764004.1 lysophospholipid transporter LplT -
  I6K02_RS00545 (I6K02_00545) thiD 120684..121493 (+) 810 WP_006764003.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6K02_RS00550 (I6K02_00550) - 121512..122471 (-) 960 WP_035972140.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48831.28 Da        Isoelectric Point: 6.9992

>NTDB_id=534984 I6K02_RS00530 WP_006764006.1 116641..118017(-) (radA) [Burkholderia dolosa strain FDAARGOS_1272]
MAKQKTVYVCTECGGQTPKWQGQCPSCHAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIANERRALYISGEESAAQIALRAQRLALLEGGAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVVDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIDGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=534984 I6K02_RS00530 WP_006764006.1 116641..118017(-) (radA) [Burkholderia dolosa strain FDAARGOS_1272]
GTGGCCAAACAGAAAACCGTCTACGTCTGCACCGAATGCGGCGGGCAGACGCCGAAATGGCAGGGACAGTGTCCGTCCTG
TCACGCGTGGAATACGCTGGTCGAGTCGGTCGCCGAGTCGCCGTCCGCCCATCGGTTCCAGTCGCTCGCGAAGCGCGCGC
CCGTGCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTTTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAACGAACGGCGCGCACTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAAGGCGGCGCGCCGGCCGCCGAATTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCGGACGTGGCCGTCGTCGACTCGATCCAGACCGTCTATTCGGAGGCGCTCACGTCGGC
GCCCGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAATCTCGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGTTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAACAGGTCGTGCCGG
GTTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGGCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAATCCGCGTCGGCTCGCAGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAATGCGGTCGGCGGCGTGAAGATTACCGAGCCGGCCGCCGATCTCGCGG
TGCTGCTCGCGATCCACTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCG
GGCGAGATCCGGCCGTCTCCGCGCGGCCAGGAGCGGCTGCGCGAAGCCGCGAAGCTCGGCTTCACGGCCGCGCTGATTCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGACGGCCTGAACGTGATGGCCGTCGAACGGATCGAGCAGGCGATCGATCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.421

100

0.467
  radA Streptococcus pneumoniae D39

46.421

100

0.467
  radA Streptococcus pneumoniae R6

46.421

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.467
  radA Streptococcus mitis SK321

46.608

99.782

0.465
  radA Streptococcus mitis NCTC 12261

46.389

99.782

0.463