Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LEL86_RS27205 Genome accession   NZ_CP084357
Coordinates   6335630..6336616 (-) Length   328 a.a.
NCBI ID   WP_225682613.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6330630..6341616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS27195 (LEL86_27195) - 6331013..6334114 (-) 3102 WP_225682611.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  LEL86_RS27200 (LEL86_27200) - 6334182..6335597 (-) 1416 WP_225682612.1 GH1 family beta-glucosidase -
  LEL86_RS27205 (LEL86_27205) amiE 6335630..6336616 (-) 987 WP_225682613.1 ABC transporter ATP-binding protein Regulator
  LEL86_RS27210 (LEL86_27210) - 6336613..6337617 (-) 1005 WP_032770212.1 ABC transporter permease -
  LEL86_RS27215 (LEL86_27215) - 6337621..6338601 (-) 981 WP_032770450.1 ABC transporter permease -
  LEL86_RS27220 (LEL86_27220) - 6338598..6339731 (-) 1134 WP_032780540.1 ABC transporter ATP-binding protein -
  LEL86_RS27225 (LEL86_27225) - 6339774..6341450 (-) 1677 WP_225682614.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35531.94 Da        Isoelectric Point: 7.3866

>NTDB_id=534980 LEL86_RS27205 WP_225682613.1 6335630..6336616(-) (amiE) [Streptomyces sp. WA6-1-16]
MSAEPVLTISGLNVDYGTDAGAVHALRDIDLTLNRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHRPGGDR
VDILSLAPQQLRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLAAHRPELKKRQRTERAKELLDLVGISADRLAAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRRLVQLREQLNFSVVFITHDISLLIEFSDRIAIMYGGRIV
EQAGAAEIYRDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPTGCAFHPRCGKAFAPCAGQIPPLAPPADGPGR
AVACHLHA

Nucleotide


Download         Length: 987 bp        

>NTDB_id=534980 LEL86_RS27205 WP_225682613.1 6335630..6336616(-) (amiE) [Streptomyces sp. WA6-1-16]
ATGAGCGCCGAGCCGGTCCTGACCATCAGCGGACTCAACGTCGACTACGGCACCGACGCGGGCGCCGTCCACGCCCTGCG
CGACATCGACCTCACCCTGAACCGGGGCGAAGTCCTGGGCCTGGCAGGGGAGTCGGGCTCGGGCAAGTCGACGCTCGCCT
ACGCCGTGACCCGGCTGCTCTCCCCGCCCGGCGTCATCACCGGGGGAGAGGTCCACTACCACCGCCCCGGCGGCGACCGC
GTCGACATCCTCTCCCTCGCCCCGCAGCAGCTGCGCGCCTTCCGCTGGCAGGAGCTGTCCATCGTCTTCCAGGGAGCGAT
GAACTCCCTCAACCCCGTGCACACGGTTCACAGCCAGCTCACCGACGTCCTCGCCGCCCACCGGCCCGAGCTGAAGAAGC
GCCAACGCACGGAACGGGCGAAGGAGTTGCTGGATCTCGTCGGCATCTCCGCCGACCGGCTCGCCGCCTACCCGCACCAG
CTCTCCGGCGGGATGCGGCAGCGCGTGATGATCGCCATGGCGCTTGCCCTGGAACCCGAGATCGTCATCATGGACGAGCC
GACCACCGCGCTCGACGTGGTGATGCAGCGCCAGATCCTGCGACGGCTGGTCCAGTTGAGGGAACAGCTGAACTTCTCGG
TCGTGTTCATCACCCACGACATCTCCCTCCTGATCGAATTCTCGGACCGGATCGCGATCATGTACGGGGGCCGCATCGTG
GAGCAGGCGGGTGCGGCGGAGATCTACCGCGACCCCCGCCACCCGTACAGCGACGGGCTCCTGCACTCCTTCCCCGCGCT
CCACGGCCCGCGCCGCGAACTGACCGGCATCCCGGGCTCCCCGCCGCACCTCTCCGCGATGCCCACCGGCTGCGCCTTCC
ACCCGCGCTGCGGCAAGGCCTTCGCGCCGTGCGCCGGGCAGATCCCGCCGCTCGCCCCGCCCGCCGACGGACCGGGCCGG
GCGGTCGCCTGCCATCTGCACGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-188)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.604

90.854

0.369
  amiE Streptococcus thermophilus LMD-9

40.604

90.854

0.369
  oppD Streptococcus mutans UA159

37.812

97.561

0.369
  amiE Streptococcus salivarius strain HSISS4

40.404

90.549

0.366