Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LEL86_RS25370 Genome accession   NZ_CP084357
Coordinates   5906280..5907377 (-) Length   365 a.a.
NCBI ID   WP_402529123.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5901280..5912377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS25355 (LEL86_25355) - 5901448..5902506 (-) 1059 WP_006128220.1 VWA domain-containing protein -
  LEL86_RS25360 (LEL86_25360) - 5902671..5904968 (-) 2298 WP_412556818.1 collagenase -
  LEL86_RS25365 (LEL86_25365) - 5905249..5906253 (-) 1005 WP_225683566.1 ABC transporter ATP-binding protein -
  LEL86_RS25370 (LEL86_25370) amiE 5906280..5907377 (-) 1098 WP_402529123.1 ABC transporter ATP-binding protein Regulator
  LEL86_RS25375 (LEL86_25375) - 5907374..5908360 (-) 987 WP_225682453.1 ABC transporter permease -
  LEL86_RS25380 (LEL86_25380) - 5908357..5909328 (-) 972 WP_225682454.1 ABC transporter permease -
  LEL86_RS25385 (LEL86_25385) - 5909349..5911094 (-) 1746 WP_093444081.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 38722.34 Da        Isoelectric Point: 6.9233

>NTDB_id=534972 LEL86_RS25370 WP_402529123.1 5906280..5907377(-) (amiE) [Streptomyces sp. WA6-1-16]
MTVEPTTEPDQLLEPDQPLLRVHDLRVAFDTPAGAVQAVDGVSFTVAAGRTLGLVGESGSGKSVTSLAVMGLHRRARVSG
SITLAGEELLGLTDRRFGRLRGRRMAMVFQDPLSALHPAYTVGEQIAEAHRHHFGSARRVARRRAVDMLGEVGIPEPARR
AGEFPHQFSGGMRQRAMIAMALSCEPELLVADEPTTALDVTVQAQILELIARLQQERGLGVLMITHDLGVVARVAHEVLV
MYGGRGAEQAPVDALFSSPAHPYTRGLLDSLPRLDDPDDAPLRAIPGSPPSPAEPRTGCPFAPRCPRAAAATAPERARCA
GESPRPRDVPGEGRLVACHLPLPAAPAVPHPGPPGVAPVPAEEAR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=534972 LEL86_RS25370 WP_402529123.1 5906280..5907377(-) (amiE) [Streptomyces sp. WA6-1-16]
CTGACCGTGGAGCCCACCACCGAACCGGATCAGCTTCTCGAACCGGACCAGCCCCTGCTGCGCGTCCACGATCTGCGGGT
CGCCTTCGACACCCCGGCCGGAGCCGTCCAGGCCGTCGACGGGGTCTCCTTCACCGTGGCGGCCGGCCGCACCCTGGGCC
TGGTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACCTCCCTCGCCGTGATGGGCCTGCACCGCCGGGCCCGGGTGAGCGGA
TCGATCACCCTCGCCGGAGAGGAACTCCTCGGCCTGACCGACCGCCGGTTCGGCCGGCTGCGCGGACGCCGGATGGCGAT
GGTCTTCCAGGACCCGCTGTCCGCGCTCCACCCCGCGTACACCGTCGGCGAACAGATCGCGGAGGCCCACCGCCACCACT
TCGGCAGCGCCCGACGCGTCGCCCGCAGAAGGGCGGTGGACATGCTCGGCGAGGTCGGCATCCCCGAACCGGCCCGCCGG
GCGGGGGAGTTCCCGCACCAGTTCTCCGGCGGCATGCGCCAGCGCGCCATGATCGCCATGGCCCTGTCCTGCGAACCCGA
ACTGCTCGTCGCCGACGAACCGACCACCGCGCTCGACGTCACCGTCCAGGCGCAGATCCTCGAACTGATCGCCCGCCTCC
AGCAGGAACGCGGACTGGGCGTCCTGATGATCACGCACGACCTGGGCGTGGTGGCGCGCGTCGCCCACGAGGTGCTCGTC
ATGTACGGCGGACGCGGTGCCGAACAGGCCCCGGTGGACGCGCTGTTCAGCAGTCCCGCGCATCCCTACACCCGCGGTCT
CCTGGACTCGCTGCCCCGTCTGGACGACCCCGACGACGCACCGCTGCGCGCCATCCCCGGCTCCCCGCCGTCACCGGCCG
AGCCGCGAACCGGCTGCCCCTTCGCACCGCGCTGCCCCCGTGCGGCCGCCGCCACCGCCCCGGAGCGGGCCCGCTGCGCC
GGGGAGAGCCCCCGCCCCCGGGACGTACCCGGCGAGGGGCGGCTCGTCGCCTGCCACCTTCCCCTGCCGGCCGCCCCGGC
CGTCCCGCACCCCGGTCCGCCGGGCGTGGCTCCCGTACCGGCCGAGGAGGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(40-195)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(248-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.631

84.658

0.386
  amiE Streptococcus thermophilus LMG 18311

45.307

84.658

0.384
  amiE Streptococcus thermophilus LMD-9

45.307

84.658

0.384
  oppD Streptococcus mutans UA159

47.44

80.274

0.381