Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LEL86_RS21505 Genome accession   NZ_CP084357
Coordinates   4984315..4985337 (+) Length   340 a.a.
NCBI ID   WP_318654420.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4979315..4990337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS36060 - 4980183..4980611 (+) 429 WP_093437434.1 hypothetical protein -
  LEL86_RS21485 (LEL86_21485) - 4980710..4981219 (+) 510 WP_093437677.1 GNAT family N-acetyltransferase -
  LEL86_RS21490 (LEL86_21490) - 4981313..4982143 (-) 831 WP_093437437.1 ABC transporter ATP-binding protein -
  LEL86_RS21495 (LEL86_21495) - 4982140..4983159 (-) 1020 WP_225682021.1 ABC transporter substrate-binding protein -
  LEL86_RS21500 (LEL86_21500) - 4983196..4984059 (-) 864 WP_093437442.1 ABC transporter permease -
  LEL86_RS21505 (LEL86_21505) cytR 4984315..4985337 (+) 1023 WP_318654420.1 LacI family DNA-binding transcriptional regulator Regulator
  LEL86_RS21510 (LEL86_21510) - 4985365..4985949 (-) 585 WP_010072804.1 GAF domain-containing protein -
  LEL86_RS21515 (LEL86_21515) - 4985946..4986569 (-) 624 WP_010057974.1 GTP-binding protein -
  LEL86_RS21520 (LEL86_21520) - 4986547..4986918 (-) 372 WP_006128964.1 DUF742 domain-containing protein -
  LEL86_RS21525 (LEL86_21525) - 4986921..4987355 (-) 435 WP_006128963.1 roadblock/LC7 domain-containing protein -
  LEL86_RS21530 (LEL86_21530) - 4987361..4989559 (-) 2199 WP_225682023.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35607.84 Da        Isoelectric Point: 10.0618

>NTDB_id=534965 LEL86_RS21505 WP_318654420.1 4984315..4985337(+) (cytR) [Streptomyces sp. WA6-1-16]
MTLDAVAREAGVSLATASRALNGTTRVRDDLRGRVRAAADLLGYIPNAHAQALASADGNRTVGLICHDVGDPYFAGIAGG
VMRAAAEQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSMRV
DTVQPENRAGAAALAASLVALGHRDFAVLSGPPELTTVADRLAGFREGLAAAGITLRRVVRGAFTREGGHAAARQLLAAG
DARPTCVFAVTDVMAVGALAALREAGVRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSRAGRSR
VLRIEGNVVLRGSTGAPPGS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=534965 LEL86_RS21505 WP_318654420.1 4984315..4985337(+) (cytR) [Streptomyces sp. WA6-1-16]
GTGACGCTGGACGCGGTGGCACGCGAGGCTGGCGTCTCGCTCGCCACCGCGTCCCGGGCCCTCAACGGCACGACCAGGGT
CCGCGACGATCTGCGCGGCCGGGTGCGCGCGGCGGCCGATCTCCTCGGCTACATCCCCAACGCCCATGCCCAGGCCCTCG
CCAGCGCCGATGGCAACCGTACGGTGGGGCTGATCTGCCACGACGTGGGCGACCCGTACTTCGCGGGCATCGCCGGCGGG
GTGATGCGCGCGGCCGCCGAGCAGGACCTGCTGGTGATGCTGGCCTCCACCTTCCGGGAACCGGCGCGGGAGATCGCGTA
CGTCTCGATGCTGCGGGCCCAGCGGGCGCGGGCCATCCTCCTGATCGGCTCCGGCTTCCAGGACCGGGCCTGGGAGCGGG
CGATGGACGCCGAGCTGGAGCCGTACGTCCGGGCGGGCGGCCGGGTCGCGGTGGTCAGCCGGCACCGGTCCATGCGGGTG
GACACCGTCCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCACTGGGGCACCGGGACTTCGC
GGTGCTCAGCGGTCCGCCGGAACTGACCACGGTGGCAGACCGGTTGGCGGGTTTCCGTGAGGGGCTCGCCGCAGCGGGCA
TCACCCTTCGGCGGGTGGTGCGGGGCGCGTTCACCCGGGAGGGCGGGCACGCGGCGGCACGTCAGCTGCTGGCCGCCGGG
GACGCCCGGCCGACCTGCGTGTTCGCGGTGACCGATGTGATGGCGGTCGGCGCGCTGGCCGCGCTGCGGGAGGCCGGCGT
GCGCGTCCCCGAGGACATGTCGCTCGCGGGGTTCGACGACATCCCCGTCGTACGGGAGGTGTCGCCGCCGCTGACCACGG
TGGCACTGCCGCTCACGGAGATGGGCGAGCAGGTGATCGCCCTCGCTCTGCGGACGCCGTCGCGGGCGGGGCGTTCCCGG
GTGCTGCGGATCGAGGGGAACGTGGTCCTGCGGGGCAGTACCGGTGCGCCGCCCGGGAGTTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)

Bacterial regulatory proteins, lacI family (LacI)

(2-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.447

100

0.362