Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6J87_RS02860 Genome accession   NZ_CP069480
Coordinates   552207..552836 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1257     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 547207..557836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J87_RS02845 (I6J87_02845) helD 547449..549503 (-) 2055 WP_204097945.1 DNA helicase IV -
  I6J87_RS02850 (I6J87_02850) yccF 549626..550072 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I6J87_RS02855 (I6J87_02855) yccS 550082..552244 (+) 2163 WP_000875067.1 YccS family putative transporter -
  I6J87_RS02860 (I6J87_02860) sxy/tfoX 552207..552836 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6J87_RS02865 (I6J87_02865) sulA 553055..553564 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  I6J87_RS02870 (I6J87_02870) ompA 553920..554960 (+) 1041 WP_001313715.1 porin OmpA -
  I6J87_RS02875 (I6J87_02875) matP 555036..555488 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  I6J87_RS02880 (I6J87_02880) ycbZ 555674..557434 (+) 1761 WP_000156496.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=534961 I6J87_RS02860 WP_000839153.1 552207..552836(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1257]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=534961 I6J87_RS02860 WP_000839153.1 552207..552836(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1257]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1