Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LEL86_RS13220 Genome accession   NZ_CP084357
Coordinates   2899731..2901098 (+) Length   455 a.a.
NCBI ID   WP_006123203.1    Uniprot ID   A0A5D4JIE7
Organism   Streptomyces sp. WA6-1-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2894731..2906098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS13195 (LEL86_13195) vraR 2895385..2896005 (-) 621 WP_032780914.1 response regulator Regulator
  LEL86_RS13200 (LEL86_13200) - 2896005..2897267 (-) 1263 WP_225681186.1 sensor histidine kinase -
  LEL86_RS13205 (LEL86_13205) - 2897225..2898046 (-) 822 WP_032780918.1 ABC transporter permease -
  LEL86_RS13210 (LEL86_13210) - 2898043..2898900 (-) 858 WP_225681187.1 ABC transporter ATP-binding protein -
  LEL86_RS13215 (LEL86_13215) - 2899037..2899675 (+) 639 WP_006123204.1 vitamin K epoxide reductase family protein -
  LEL86_RS13220 (LEL86_13220) rarA 2899731..2901098 (+) 1368 WP_006123203.1 replication-associated recombination protein A Machinery gene
  LEL86_RS13225 (LEL86_13225) - 2901120..2901821 (-) 702 WP_006123202.1 DUF2470 domain-containing protein -
  LEL86_RS13230 (LEL86_13230) rpsD 2902013..2902627 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  LEL86_RS13235 (LEL86_13235) - 2902645..2904858 (-) 2214 WP_150195814.1 ATP-binding protein -
  LEL86_RS13240 (LEL86_13240) - 2905079..2905534 (+) 456 WP_032768154.1 DUF948 domain-containing protein -
  LEL86_RS13245 (LEL86_13245) - 2905542..2905889 (+) 348 WP_032780928.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48464.76 Da        Isoelectric Point: 5.9906

>NTDB_id=534952 LEL86_RS13220 WP_006123203.1 2899731..2901098(+) (rarA) [Streptomyces sp. WA6-1-16]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRAGEGGEQE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=534952 LEL86_RS13220 WP_006123203.1 2899731..2901098(+) (rarA) [Streptomyces sp. WA6-1-16]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGCACTCTCGACGAGGTCGTCGGCCAGCAGCATCTTCTGAAGCCGGGCTCGCCCCTGCGCCGTCTCGTCGGCG
ACGGGGGCGGTCCGGCGGGGGCGTCCTCCGTCATCCTGTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCGTACGTG
GTCAGCAAAGCCACCAACAAGCGTTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCCGTCATCGA
GAGCGCGCGTCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTCCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACGGAGAATCCCTACTTCTCG
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCCCTGCTGCG
CCGGGCGCTGACCGAGGAACGGGGGCTCGGCGGGGCGGTCACCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGGATCG
CCGGCGGCGACGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCCGCCGGTGCGGCCATCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGCGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGTTCCGACGTGGACGCGGCACTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGATCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCTCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGACGATGTGCGCAGAGGACTGGCCG
GACCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGATGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCGTCCGCGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGGGCGGCGAGC
AGGAGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4JIE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.548

94.725

0.422