Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   LEL86_RS06950 Genome accession   NZ_CP084357
Coordinates   1520750..1522975 (+) Length   741 a.a.
NCBI ID   WP_093439323.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515750..1527975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS06925 (LEL86_06925) - 1516776..1517345 (+) 570 WP_109178577.1 CGNR zinc finger domain-containing protein -
  LEL86_RS06930 (LEL86_06930) - 1517371..1517955 (-) 585 WP_150196816.1 hypothetical protein -
  LEL86_RS06935 (LEL86_06935) - 1518064..1518300 (+) 237 Protein_1351 response regulator transcription factor -
  LEL86_RS06940 (LEL86_06940) - 1518313..1519983 (-) 1671 WP_225680310.1 MFS transporter -
  LEL86_RS06945 (LEL86_06945) - 1520130..1520687 (+) 558 WP_093439320.1 MarR family winged helix-turn-helix transcriptional regulator -
  LEL86_RS06950 (LEL86_06950) recD/recD2/recDB 1520750..1522975 (+) 2226 WP_093439323.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LEL86_RS06955 (LEL86_06955) - 1523191..1524489 (+) 1299 WP_006124608.1 citrate synthase -
  LEL86_RS06960 (LEL86_06960) - 1525025..1527451 (-) 2427 WP_225680311.1 heavy metal translocating P-type ATPase -
  LEL86_RS06965 (LEL86_06965) - 1527575..1527892 (-) 318 WP_150194080.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79840.35 Da        Isoelectric Point: 6.6501

>NTDB_id=534933 LEL86_RS06950 WP_093439323.1 1520750..1522975(+) (recD/recD2/recDB) [Streptomyces sp. WA6-1-16]
MSNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHSQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDVIEQEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPITAVYLVPFHRAELSLAGQVRRLLRTEEDRMPAFQDVD
WGKALAWLATRTGASLAPEQEQAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GGPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTEGLSDFFLFVEDETEDAGKLAVDVAARRIPAKFGLNARRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGIVTGLDVDEQKLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=534933 LEL86_RS06950 WP_093439323.1 1520750..1522975(+) (recD/recD2/recDB) [Streptomyces sp. WA6-1-16]
ATGTCCAACATGGCCGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGAGCCGGCGACCTCCTCACCGTGGTCGGTGCGCTGCTCGGCGCGCAGGTCGGTGAGTCGCTGC
GGATGGAGGGCCGTTGGGGCTCGCACTCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTCGACGTCATCGAGCAGGAACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAAGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACAAGATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTGCAGTACGCCCTGTCCCAGTCCTCCGACCAGGGGCACTGCTATCTCCCGGAGGAACGGCTC
ATCGCGGACGGCGTCAAGCTCCTCCAGGTCGACACCGGGCTGGTCATCGAGTGCCTGGCCGAGCTGGCCGCCGATCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGTCCCCCGAGGGCGGCGAGCCGATCACGGCGGTCTACCTCGTCCCGTTCCACCGGG
CCGAGCTGTCCCTCGCCGGGCAGGTCAGGCGGCTGCTGCGGACGGAGGAAGACCGGATGCCGGCCTTCCAGGACGTGGAC
TGGGGCAAGGCCCTGGCCTGGCTGGCCACGCGTACGGGGGCCTCGCTGGCGCCCGAGCAGGAGCAGGCCGTACGTCTCGC
GCTCAGCCGCAAGGTGGCCGTCCTGACCGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGGTCGATCGTCGAGCTGG
CCCGGGCGAAGAAGGCCAAGGTGGTGCTCGCCGCCCCCACCGGGCGCGCCGCCAAGCGCCTCTCCGAGCTGACCGGGGCC
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCCGCGTACGACCGGGACCGTCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCACCCGGTG
CCCACCTCCTCCTGGTGGGCGATGTCGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTGCTCAGCGATCTGCTCGCGGAG
GGCGGTCCGGTCCCCGCCGTCCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCGCACCG
CATCAACGCCGGACAGCCACCCCTCACCGAGGGGCTGAGCGATTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCGG
GCAAGCTCGCCGTCGATGTCGCGGCCCGCCGCATTCCGGCCAAGTTCGGTCTCAACGCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGGGGCCCGGCCGGCGCGGGCCATCTGAACGGGCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGA
CCTCCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTCTTCAACGGCACCGTCGGCATCGTCACCGGCCTCGACGTGGATGAGCAGAAGCTCACCGTCCGCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCATGACGATCCATCGCTC
CCAGGGCAGCGAGTATCCGGCCGTCGTCATCCCCGTCACCACCAGCGCCTGGATGATGCTCCAGCGCAACCTGCTCTACA
CGGCCGTGACGAGGGCCAAGAAGCTCGTCGTGCTCGTCGGGTCCCGTAAGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGGCGTTGTACGGCACTGGATTTCCGGCTCCGGGGCGGCTCCGGCGAAGACTTCTCGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix domain (HHH_5)

(94-143)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.256

100

0.363