Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LEL86_RS02635 Genome accession   NZ_CP084357
Coordinates   561874..563286 (-) Length   470 a.a.
NCBI ID   WP_032781150.1    Uniprot ID   A0A5D4ILP0
Organism   Streptomyces sp. WA6-1-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556874..568286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS02615 (LEL86_02615) - 557503..558174 (-) 672 WP_032766500.1 SigE family RNA polymerase sigma factor -
  LEL86_RS02620 (LEL86_02620) - 558335..559249 (-) 915 WP_006125493.1 A/G-specific adenine glycosylase -
  LEL86_RS02625 (LEL86_02625) - 559555..560286 (+) 732 WP_225683427.1 hypothetical protein -
  LEL86_RS02630 (LEL86_02630) disA 560669..561793 (-) 1125 WP_006125491.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LEL86_RS02635 (LEL86_02635) radA/sms 561874..563286 (-) 1413 WP_032781150.1 DNA repair protein RadA Machinery gene
  LEL86_RS02640 (LEL86_02640) - 563506..565446 (+) 1941 WP_412556726.1 BACON domain-containing protein -
  LEL86_RS02645 (LEL86_02645) - 565523..566386 (-) 864 WP_225679487.1 hypothetical protein -
  LEL86_RS02650 (LEL86_02650) - 566426..567376 (+) 951 WP_032781145.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49522.64 Da        Isoelectric Point: 8.0042

>NTDB_id=534928 LEL86_RS02635 WP_032781150.1 561874..563286(-) (radA/sms) [Streptomyces sp. WA6-1-16]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=534928 LEL86_RS02635 WP_032781150.1 561874..563286(-) (radA/sms) [Streptomyces sp. WA6-1-16]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGACCGTCCTACCGCTGCACCGAATGCGGTTGGACGACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACGGCGGCGG
GCCGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGACAGCCACGGCCCGCTCCACCGGGGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGACCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCATGTGACGAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACAGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGTCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTCGCGGTGC
CGGGCACCTGTCTCACCGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCGGTCGCGCTCGCCCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGAGTGCAGCGGAGGCTGGCCGAGGCACACCGTCTGGGCTTCACCCACGCCCT
CGTGCCGACCGATCCGGGAAGGGTTCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCACCACAGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4ILP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

44.522

91.277

0.406
  radA Streptococcus pneumoniae D39

44.522

91.277

0.406
  radA Streptococcus pneumoniae R6

44.522

91.277

0.406
  radA Streptococcus pneumoniae TIGR4

44.522

91.277

0.406
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404