Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LEL86_RS00270 Genome accession   NZ_CP084357
Coordinates   55078..56208 (+) Length   376 a.a.
NCBI ID   WP_032764579.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50078..61208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS00255 (LEL86_00255) dnaA 50081..51940 (+) 1860 WP_229826776.1 chromosomal replication initiator protein DnaA -
  LEL86_RS00260 (LEL86_00260) dnaN 52835..53965 (+) 1131 WP_032764581.1 DNA polymerase III subunit beta -
  LEL86_RS00265 (LEL86_00265) gnd 54127..55011 (+) 885 WP_032764580.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  LEL86_RS00270 (LEL86_00270) recF 55078..56208 (+) 1131 WP_032764579.1 DNA replication/repair protein RecF Machinery gene
  LEL86_RS00275 (LEL86_00275) - 56286..56789 (+) 504 WP_024263702.1 DUF721 domain-containing protein -
  LEL86_RS00280 (LEL86_00280) gyrB 57233..59305 (+) 2073 WP_032776530.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40865.51 Da        Isoelectric Point: 6.8623

>NTDB_id=534918 LEL86_RS00270 WP_032764579.1 55078..56208(+) (recF) [Streptomyces sp. WA6-1-16]
MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEDVG
PERTRDELYEQLIAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVSAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=534918 LEL86_RS00270 WP_032764579.1 55078..56208(+) (recF) [Streptomyces sp. WA6-1-16]
ATGCACGTCACGCACCTCTCGCTCGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCATCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGCG
TCTCCTCGGACGCCCCGCTCGTGCGCATGGGCGCGGAGCGTGCGGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGGTCGAGCTGGAGCTGAACCCGGGCCGGGCGAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTCGGCATCGTACGGACCGTGCTGTTCGCCCCGGAGGATCTGGCGCTGGTCAAGGGCGACCCCGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGTTCGCCCCGGATGGCCGGGGTCCGTTCCGACTACGAACGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCCCGGCGGCACGGCGGCCGCTCGATGGATCTGTCCACCTTGGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGCTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGCGGTCCGGTGGCGCTGGAGTACCGCAGTTCGGTCGGCGAGGACGTGGGT
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCGCTCGCGGGGGTCCGGAAGCAGGAGATCGAGCGGGG
AGTGACGCTGGTCGGCCCGCACCGCGACGATCTGCTGCTGGGTCTGCGCGGAATGCCGGCCAAGGGGTACGCGAGTCATG
GCGAGTCCTGGAGTTACGCGCTGGCGCTGCGGCTCGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGATGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCCGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGCGGAGGACGTGCCGGGTGTGCTGGCGGGGACGCGGTACGCGGTGTCCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.534

97.074

0.364