Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6J84_RS15630 Genome accession   NZ_CP069453
Coordinates   3342883..3343512 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain FDAARGOS_1254     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3337883..3348512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J84_RS15610 (I6J84_15610) ycbZ 3338283..3340043 (-) 1761 WP_000156498.1 Lon protease family protein -
  I6J84_RS15615 (I6J84_15615) matP 3340229..3340681 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  I6J84_RS15620 (I6J84_15620) ompA 3340759..3341799 (-) 1041 WP_001441917.1 porin OmpA -
  I6J84_RS15625 (I6J84_15625) sulA 3342155..3342664 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  I6J84_RS15630 (I6J84_15630) sxy/tfoX 3342883..3343512 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6J84_RS15635 (I6J84_15635) yccS 3343475..3345637 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6J84_RS15640 (I6J84_15640) yccF 3345647..3346093 (-) 447 WP_001261236.1 YccF domain-containing protein -
  I6J84_RS15645 (I6J84_15645) helD 3346216..3348270 (+) 2055 WP_001580558.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=534858 I6J84_RS15630 WP_000839136.1 3342883..3343512(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1254]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=534858 I6J84_RS15630 WP_000839136.1 3342883..3343512(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1254]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99