Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LEL82_RS02080 Genome accession   NZ_CP084321
Coordinates   450482..451810 (+) Length   442 a.a.
NCBI ID   WP_031757009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HS18-89     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445482..456810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL82_RS02060 (LEL82_02060) - 446319..446885 (-) 567 WP_003084491.1 hypothetical protein -
  LEL82_RS02065 (LEL82_02065) rsmD 446888..447484 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LEL82_RS02070 (LEL82_02070) - 447484..448971 (-) 1488 WP_003102862.1 pitrilysin family protein -
  LEL82_RS02075 (LEL82_02075) - 448964..450361 (-) 1398 WP_003084498.1 pitrilysin family protein -
  LEL82_RS02080 (LEL82_02080) pilA 450482..451810 (+) 1329 WP_031757009.1 signal recognition particle-docking protein FtsY Machinery gene
  LEL82_RS02085 (LEL82_02085) ftsE 451807..452478 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LEL82_RS02090 (LEL82_02090) ftsX 452478..453485 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LEL82_RS02095 (LEL82_02095) rpoH 453599..454453 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LEL82_RS02100 (LEL82_02100) - 454518..455123 (+) 606 WP_003084511.1 hypothetical protein -
  LEL82_RS02105 (LEL82_02105) mtgA 455128..455859 (-) 732 WP_073658746.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LEL82_RS02110 (LEL82_02110) - 455896..456273 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LEL82_RS02115 (LEL82_02115) thiS 456376..456576 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 46967.34 Da        Isoelectric Point: 4.7091

>NTDB_id=534818 LEL82_RS02080 WP_031757009.1 450482..451810(+) (pilA) [Pseudomonas aeruginosa strain HS18-89]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASLFL
GRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVIL
VVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGID
VLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVI
FALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=534818 LEL82_RS02080 WP_031757009.1 450482..451810(+) (pilA) [Pseudomonas aeruginosa strain HS18-89]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGC
CGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTC
GGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCAC
CACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGC
AGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTG
GTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGT
CATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGG
TGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGAC
GTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGAT
CGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGG
CCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATC
TTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGA
GGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(152-217)

SRP54-type protein, GTPase domain (SRP54)

(237-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.113

95.928

0.462