Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TOL2_RS11915 Genome accession   NC_018645
Coordinates   2582034..2582990 (+) Length   318 a.a.
NCBI ID   WP_014957689.1    Uniprot ID   -
Organism   Desulfobacula toluolica Tol2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2577034..2587990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL2_RS11900 (TOL2_22130) - 2577143..2579227 (-) 2085 WP_014957686.1 6-phosphofructokinase -
  TOL2_RS11905 (TOL2_22140) - 2579252..2580667 (-) 1416 WP_014957687.1 GGDEF domain-containing protein -
  TOL2_RS11910 (TOL2_22150) - 2580843..2581817 (-) 975 WP_148278105.1 bile acid:sodium symporter -
  TOL2_RS11915 (TOL2_22160) pilA 2582034..2582990 (+) 957 WP_014957689.1 signal recognition particle-docking protein FtsY Machinery gene
  TOL2_RS11920 (TOL2_22170) - 2583297..2583713 (+) 417 WP_014957690.1 nuclear transport factor 2 family protein -
  TOL2_RS11925 (TOL2_22180) ligA 2583708..2585735 (-) 2028 WP_014957691.1 NAD-dependent DNA ligase LigA -
  TOL2_RS11930 (TOL2_22190) - 2585728..2586495 (-) 768 WP_014957692.1 nucleoside phosphorylase -
  TOL2_RS11935 (TOL2_22200) - 2586464..2586721 (-) 258 WP_014957693.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34509.93 Da        Isoelectric Point: 6.8965

>NTDB_id=53479 TOL2_RS11915 WP_014957689.1 2582034..2582990(+) (pilA) [Desulfobacula toluolica Tol2]
MVENKKEGKGFFSKLKTGLAKTRKVLTTDINELFGPGKAIDEVLFEELEELLITSDLGIDITMEMMERIKKKSKKLSSAE
ELKQVLKEELIDLFPNTSTDTSTGTSDTAKEKPVTKPHVIMVVGVNGTGKTTTLGKLAMKFTSQGKKVLIAAADTFRAAA
IEQVEIWADRSNSSIVRHKAGADPAAVAYDAVEASIARDIDIVLIDTAGRLHTQKNLMEELKKIKRSVNKKMPGAPHEVL
MVLDATTGQNAISQATLFNQAVELTQIALTKLDGTAKGGIVAAISSTMKLPITYIGVGEKIEDLQEFDASRFVTALFD

Nucleotide


Download         Length: 957 bp        

>NTDB_id=53479 TOL2_RS11915 WP_014957689.1 2582034..2582990(+) (pilA) [Desulfobacula toluolica Tol2]
TTGGTGGAGAATAAAAAAGAGGGAAAAGGTTTTTTTTCAAAACTGAAAACCGGACTGGCAAAGACAAGGAAGGTTCTGAC
CACTGACATAAATGAATTATTTGGTCCTGGCAAGGCCATTGATGAAGTGCTGTTTGAAGAATTAGAAGAGCTGTTGATCA
CATCTGATCTTGGGATTGATATTACCATGGAAATGATGGAAAGAATAAAGAAAAAGTCCAAAAAACTTTCCTCTGCTGAA
GAACTCAAACAGGTTTTAAAAGAAGAATTGATTGACCTGTTCCCAAATACGTCAACAGATACTTCAACAGGCACGTCAGA
TACAGCAAAAGAAAAACCAGTCACAAAACCCCATGTCATAATGGTTGTAGGCGTTAATGGAACCGGCAAAACAACGACCT
TGGGAAAGCTTGCAATGAAGTTCACATCCCAGGGAAAAAAAGTCCTCATTGCAGCAGCAGACACCTTCAGGGCCGCTGCA
ATCGAACAAGTGGAAATCTGGGCAGACCGGTCCAATTCCTCCATTGTCAGACATAAGGCAGGAGCTGATCCGGCAGCCGT
TGCCTATGATGCGGTTGAAGCATCCATTGCCAGGGATATTGATATTGTCTTGATTGATACGGCCGGCAGACTTCATACAC
AAAAGAACCTGATGGAAGAACTTAAAAAGATAAAGCGCTCCGTTAATAAAAAAATGCCGGGGGCTCCCCATGAGGTATTA
ATGGTTCTTGATGCGACCACCGGTCAAAATGCCATTTCCCAGGCAACCTTGTTCAACCAGGCTGTTGAACTCACCCAGAT
TGCCCTGACAAAACTTGACGGCACTGCCAAAGGCGGTATTGTCGCGGCTATTTCAAGCACCATGAAACTGCCGATAACCT
ATATTGGTGTGGGAGAGAAGATAGAAGATCTTCAGGAATTTGATGCAAGTCGCTTTGTTACTGCGTTATTTGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(26-90)

SRP54-type protein, GTPase domain (SRP54)

(117-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.684

99.371

0.494

Multiple sequence alignment