Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LDO71_RS09590 Genome accession   NZ_CP084297
Coordinates   2057731..2058366 (-) Length   211 a.a.
NCBI ID   WP_225545566.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052731..2063366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS09565 (LDO71_09565) - 2052787..2053767 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LDO71_RS09570 (LDO71_09570) kdsB 2053779..2054540 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LDO71_RS09575 (LDO71_09575) lpxK 2054550..2055560 (-) 1011 WP_207272687.1 tetraacyldisaccharide 4'-kinase -
  LDO71_RS09580 (LDO71_09580) msbA 2055563..2057290 (-) 1728 WP_159141975.1 lipid A export permease/ATP-binding protein MsbA -
  LDO71_RS09585 (LDO71_09585) - 2057287..2057715 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  LDO71_RS09590 (LDO71_09590) exbB 2057731..2058366 (-) 636 WP_225545566.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LDO71_RS09595 (LDO71_09595) - 2058416..2059303 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LDO71_RS09600 (LDO71_09600) - 2059300..2060082 (-) 783 WP_000057212.1 ParA family protein -
  LDO71_RS09605 (LDO71_09605) rsmG 2060104..2060736 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LDO71_RS09610 (LDO71_09610) murU 2060824..2061513 (-) 690 WP_225545567.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LDO71_RS09615 (LDO71_09615) - 2061513..2062526 (-) 1014 WP_031963710.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23158.05 Da        Isoelectric Point: 6.0903

>NTDB_id=534783 LDO71_RS09590 WP_225545566.1 2057731..2058366(-) (exbB) [Acinetobacter baumannii strain LHC22-2]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRCVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=534783 LDO71_RS09590 WP_225545566.1 2057731..2058366(-) (exbB) [Acinetobacter baumannii strain LHC22-2]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCCTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTTATGCAAGAACATCGCTGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393