Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LDO71_RS07550 Genome accession   NZ_CP084297
Coordinates   1624557..1625663 (+) Length   368 a.a.
NCBI ID   WP_001187342.1    Uniprot ID   A0ABX6CGL8
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619557..1630663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS07515 (LDO71_07515) grxD 1619905..1620246 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  LDO71_RS07520 (LDO71_07520) - 1620474..1621682 (+) 1209 WP_000129946.1 aspartate aminotransferase family protein -
  LDO71_RS07525 (LDO71_07525) - 1621733..1622164 (-) 432 WP_000156920.1 CBS domain-containing protein -
  LDO71_RS07530 (LDO71_07530) - 1622305..1622679 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  LDO71_RS07535 (LDO71_07535) - 1623214..1623447 (-) 234 WP_000616034.1 hypothetical protein -
  LDO71_RS07540 (LDO71_07540) - 1623663..1624022 (+) 360 WP_000185571.1 hypothetical protein -
  LDO71_RS07545 (LDO71_07545) - 1624123..1624449 (+) 327 WP_225546369.1 hypothetical protein -
  LDO71_RS07550 (LDO71_07550) pilA 1624557..1625663 (+) 1107 WP_001187342.1 signal recognition particle-docking protein FtsY Machinery gene
  LDO71_RS07555 (LDO71_07555) - 1625853..1626449 (+) 597 WP_000102943.1 nitroreductase family protein -
  LDO71_RS07560 (LDO71_07560) - 1626675..1627346 (+) 672 WP_225546370.1 DUF2057 family protein -
  LDO71_RS07565 (LDO71_07565) - 1627404..1627703 (-) 300 WP_085916945.1 cyd operon YbgE family protein -
  LDO71_RS07570 (LDO71_07570) cydX 1627704..1627805 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  LDO71_RS07575 (LDO71_07575) cydB 1627819..1628964 (-) 1146 WP_225546371.1 cytochrome d ubiquinol oxidase subunit II -
  LDO71_RS07580 (LDO71_07580) - 1628961..1630547 (-) 1587 WP_000622647.1 cytochrome ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39919.72 Da        Isoelectric Point: 4.9872

>NTDB_id=534775 LDO71_RS07550 WP_001187342.1 1624557..1625663(+) (pilA) [Acinetobacter baumannii strain LHC22-2]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=534775 LDO71_RS07550 WP_001187342.1 1624557..1625663(+) (pilA) [Acinetobacter baumannii strain LHC22-2]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGTATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGAGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGGCAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451