Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LDO71_RS01680 Genome accession   NZ_CP084297
Coordinates   365325..365801 (+) Length   158 a.a.
NCBI ID   WP_031380019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360325..370801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS01670 (LDO71_01670) - 360839..361621 (+) 783 WP_114159403.1 pilus assembly PilX N-terminal domain-containing protein -
  LDO71_RS01675 (LDO71_01675) - 361637..365311 (+) 3675 WP_225546082.1 PilC/PilY family type IV pilus protein -
  LDO71_RS01680 (LDO71_01680) pilY2 365325..365801 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene
  LDO71_RS01685 (LDO71_01685) pilE 365795..366259 (+) 465 WP_004839763.1 type IV pilin protein Machinery gene
  LDO71_RS01690 (LDO71_01690) rpsP 366407..366658 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LDO71_RS01695 (LDO71_01695) rimM 366678..367226 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LDO71_RS01700 (LDO71_01700) trmD 367272..368012 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LDO71_RS01705 (LDO71_01705) rplS 368220..368588 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LDO71_RS01710 (LDO71_01710) - 368641..369582 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  LDO71_RS01715 (LDO71_01715) - 369697..370731 (-) 1035 WP_130089833.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17393.89 Da        Isoelectric Point: 9.7307

>NTDB_id=534754 LDO71_RS01680 WP_031380019.1 365325..365801(+) (pilY2) [Acinetobacter baumannii strain LHC22-2]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=534754 LDO71_RS01680 WP_031380019.1 365325..365801(+) (pilY2) [Acinetobacter baumannii strain LHC22-2]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATTCAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.25

100

0.468
  comE Acinetobacter baylyi ADP1

42.424

100

0.443