Detailed information NTG0534754

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: I6J57_RS04970
• Genome accession: NZ_CP069444
• Coordinates: 972210..973565 (+)
• Length: 451 a.a.
• NCBI ID: WP_009248674.1
• Uniprot ID: A0A844FCK1
• Organism: [Clostridium] scindens strain FDAARGOS_1227
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 967210..978565

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J57_RS04950 (I6J57_04945)	ald	967594..968709 (+)	1116	WP_004605684.1	alanine dehydrogenase	-
I6J57_RS04955 (I6J57_04950)	-	968838..969221 (+)	384	WP_009248676.1	GntR family transcriptional regulator	-
I6J57_RS04960 (I6J57_04955)	-	969218..971656 (+)	2439	WP_004605686.1	ATP-dependent Clp protease ATP-binding subunit	-
I6J57_RS04965 (I6J57_04960)	-	971712..972125 (+)	414	WP_004605687.1	hypothetical protein	-
I6J57_RS04970 (I6J57_04965)	radA	972210..973565 (+)	1356	WP_009248674.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49127.95 Da
• Isoelectric Point: 6.2685

>NTDB_id=534754 I6J57_RS04970 WP_009248674.1 972210..973565(+) (radA) [[Clostridium] scindens strain FDAARGOS_1227]
MAKAKKSVFFCQNCGHEESKWLGQCPACKEWNTFVEEKVTSVKAGTVRDKKEAQIVALSSVETDEDERMMTEMAELDRVL
GGGIVPGSLVLVGGDPGIGKSTLLLQVCQRLAAMNKKILYISGEESLKQIKLRANRMGDFSHTLFLLCETNLDMIRNVIE
QQTPDMVVIDSIQTMYNEEVGSAPGSVSQVRESTNILMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRAVKNRFGSTNEIGVFEMQKRGLVEVENPSEFMLSGRPEHASGSVVACAMEGTRPMLMEIQALVCKSSFGMPR
RTAAGLDYNRVNLLMAVLEKRAGLPLSSYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPVSEDAIVFGEVGLSGEVR
AVTMPEQRVAEAKKLGFKTCILPEVSVKGLGQVEGIEVIGVRSVNQAMNLL

Nucleotide

• Length: 1356 bp

>NTDB_id=534754 I6J57_RS04970 WP_009248674.1 972210..973565(+) (radA) [[Clostridium] scindens strain FDAARGOS_1227]
ATGGCAAAGGCAAAAAAAAGCGTATTCTTCTGCCAGAATTGCGGGCATGAAGAAAGCAAGTGGCTGGGACAGTGCCCAGC
GTGCAAAGAATGGAATACTTTTGTTGAAGAGAAGGTGACATCTGTAAAGGCTGGAACCGTGCGGGATAAGAAGGAAGCTC
AGATCGTAGCTTTGTCGAGCGTGGAGACGGATGAAGATGAACGCATGATGACGGAAATGGCAGAGCTTGACCGGGTGCTT
GGAGGAGGAATCGTACCGGGCTCTCTGGTGCTGGTCGGAGGCGATCCTGGAATCGGAAAGTCTACGCTTCTTCTGCAGGT
CTGCCAGAGGCTGGCTGCTATGAATAAGAAGATATTATATATATCGGGAGAGGAATCTTTAAAGCAGATCAAGCTTAGGG
CAAACCGGATGGGGGATTTCTCCCATACCCTTTTTCTTCTGTGCGAGACGAATCTGGATATGATACGCAACGTAATCGAG
CAGCAGACGCCGGACATGGTGGTGATCGATTCGATTCAGACTATGTATAACGAAGAGGTGGGGTCAGCGCCAGGAAGCGT
GTCGCAGGTCAGAGAGTCTACGAATATCTTGATGCAGCTGGCTAAAGGACTAGGCATATCCATCTTTATCGTAGGACATG
TAACTAAAGAGGGCACGGTTGCGGGCCCCAGGGTATTGGAACATATGGTGGATACAGTGCTCTACTTTGAGGGAGACCGG
CATGCGTCCTACCGTATTCTCAGGGCGGTTAAGAACCGCTTTGGCTCGACCAATGAAATAGGAGTCTTTGAAATGCAGAA
AAGAGGCCTCGTGGAAGTAGAGAACCCTTCGGAATTCATGCTGAGTGGCAGGCCGGAACATGCATCCGGCTCCGTAGTGG
CATGTGCAATGGAAGGAACACGTCCGATGCTGATGGAGATTCAGGCATTGGTTTGCAAAAGCAGCTTCGGCATGCCCAGA
AGGACGGCGGCAGGCTTAGACTATAACCGCGTCAACCTGCTGATGGCAGTATTGGAAAAAAGGGCAGGATTGCCGCTGTC
CAGTTATGATGCCTACGTAAATATTGCCGGTGGCATCCGGATGAATGAGCCGGCAGCGGATCTGGGAATTGTGATGGCTA
TAGCGTCCAGTTATAAGAATAAGCCGGTGTCAGAAGATGCTATTGTTTTTGGAGAAGTAGGACTGAGCGGGGAAGTAAGG
GCTGTTACCATGCCGGAGCAGAGGGTCGCGGAGGCTAAGAAACTAGGATTTAAGACCTGTATTCTCCCGGAAGTATCGGT
GAAAGGGCTTGGGCAGGTTGAAGGAATCGAGGTTATAGGAGTCAGATCTGTAAACCAGGCGATGAATCTGTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (64-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (344-424)

3D structure

• AlphaFold DB: A0A844FCK1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.954	100	0.572
radA	Streptococcus mitis NCTC 12261	55.333	99.778	0.552
radA	Streptococcus pneumoniae Rx1	55.333	99.778	0.552
radA	Streptococcus pneumoniae D39	55.333	99.778	0.552
radA	Streptococcus pneumoniae R6	55.333	99.778	0.552
radA	Streptococcus pneumoniae TIGR4	55.333	99.778	0.552
radA	Streptococcus mitis SK321	55.333	99.778	0.552