Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6K04_RS22015 Genome accession   NZ_CP069442
Coordinates   4633937..4635337 (-) Length   466 a.a.
NCBI ID   WP_081526417.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_1274     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4628937..4640337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K04_RS21985 (I6K04_21985) - 4629054..4630520 (-) 1467 WP_204086550.1 NAD(P)H-hydrate dehydratase -
  I6K04_RS21990 (I6K04_21990) - 4630523..4631128 (-) 606 WP_011136884.1 flavin prenyltransferase UbiX -
  I6K04_RS21995 (I6K04_21995) rapZ 4631181..4632023 (-) 843 WP_043615063.1 RNase adapter RapZ -
  I6K04_RS22000 (I6K04_22000) hprK 4632004..4632960 (-) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  I6K04_RS22005 (I6K04_22005) ptsN 4632953..4633414 (-) 462 WP_043614987.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6K04_RS22010 (I6K04_22010) hpf 4633537..4633869 (-) 333 WP_011136880.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6K04_RS22015 (I6K04_22015) rpoN/rpoN1 4633937..4635337 (-) 1401 WP_081526417.1 RNA polymerase factor sigma-54 Machinery gene
  I6K04_RS22020 (I6K04_22020) lptB 4635341..4636069 (-) 729 WP_011136878.1 LPS export ABC transporter ATP-binding protein -
  I6K04_RS22025 (I6K04_22025) lptA 4636066..4636626 (-) 561 WP_043614981.1 lipopolysaccharide transport periplasmic protein LptA -
  I6K04_RS22030 (I6K04_22030) lptC 4636616..4637185 (-) 570 WP_081526418.1 LPS export ABC transporter periplasmic protein LptC -
  I6K04_RS22035 (I6K04_22035) - 4637182..4637706 (-) 525 WP_048403552.1 KdsC family phosphatase -
  I6K04_RS22040 (I6K04_22040) - 4637753..4638730 (-) 978 WP_043614976.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51461.55 Da        Isoelectric Point: 4.8629

>NTDB_id=534749 I6K04_RS22015 WP_081526417.1 4633937..4635337(-) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_1274]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDEPRDGEAAGDGPEQQDSPAEAQEADSRDD
GAGELLDWGAGARKGDDDDFDPMLNVPCPISLREHLLTQLGELALTDRDRAVVSLLIEELDDDGYLPLGLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLTLQLRRLPGDEPGHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
DAQALIARLNPHPATGFGHGDVHYVIPDISVRKLRGRWTAELNRAAMPRLRVNRLYERMLADHRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQLFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=534749 I6K04_RS22015 WP_081526417.1 4633937..4635337(-) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAACTGCAGCAATCGATCAAGCTGCTGCA
GCTGTCCACGCTGGATCTGCAGGCGGAGGTGGAACGCTTCCTGCTCGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAGGCCGCGGGCGACGGCCCCGAACAGCAGGACAGCCCGGCCGAAGCGCAGGAAGCCGATAGCCGCGACGAC
GGCGCCGGCGAGCTGCTGGACTGGGGCGCGGGCGCCCGCAAGGGGGACGACGACGACTTCGACCCCATGCTCAACGTGCC
CTGCCCCATCAGCCTGCGCGAGCACCTGCTGACCCAGCTGGGCGAGCTCGCCCTCACCGACCGCGACCGCGCGGTGGTCA
GCCTGCTGATCGAGGAGCTGGACGACGACGGCTACCTGCCGCTGGGACTGGACGAACTGGCCGGCAACCTGCCGCTGGAA
CTGGAGCTGGACAGCGACGAGCTGGCGGTGGGCCTCGCGCTGCTGCAGCAGTTCGACCCGGCCGGCGTCGGCGCCCGCTC
GCTGGCCGAATCGCTGACGCTGCAGCTGCGGCGCCTGCCGGGAGACGAGCCCGGGCACGCGCTGGCGCTGGCCATCGTCC
GCGAGCACCTGGCATTGCTGGGCGGACGCGACTACGCCAGGCTGAAAAAGCTGCTGCGCTGCGACGACGCCGCGCTGCGC
GACGCGCAGGCGCTGATCGCCAGGCTCAACCCCCACCCCGCCACCGGCTTCGGCCACGGCGACGTCCACTACGTGATCCC
CGACATCAGCGTACGCAAGCTGCGCGGCCGCTGGACCGCCGAGCTCAACCGCGCCGCGATGCCCCGCCTGCGGGTCAACC
GGCTGTACGAACGAATGCTGGCCGACCACCGCGCTGGCGGCGAAATGTCGGGCCGTCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAGCGATTTGACACCATACTCAAAGTGGCGGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATTTTGCGGGACATCGCGGAAGAGCTGGGCCTGCACGAATCCACCGTTTCCCGAT
CCACCAGCCAGAAATACCTGCTCTGTTCGCGGGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCATATCCGCGGCATGATAGACGCCGAGGACCGCGCCAAGCCGCT
GTCCGACAGCGCCATCGCCGACGCGCTGGCCAAACAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.56