Detailed information NTG0534731

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDB16_RS21165
• Genome accession: NZ_CP084209
• Coordinates: 4359108..4360133 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC2648-R2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4354108..4365133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDB16_RS21145 (LDB16_21160)	metJ	4355169..4355486 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LDB16_RS21150 (LDB16_21165)	yiiX	4355670..4356278 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LDB16_RS21155 (LDB16_21170)	rpmE	4356339..4356551 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LDB16_RS21160 (LDB16_21175)	priA	4356754..4358952 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LDB16_RS21165 (LDB16_21180)	cytR	4359108..4360133 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LDB16_RS21170 (LDB16_21185)	ftsN	4360225..4361184 (+)	960	WP_000068828.1	cell division protein FtsN	-
LDB16_RS21175 (LDB16_21190)	hslV	4361277..4361807 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LDB16_RS21180 (LDB16_21195)	hslU	4361817..4363148 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LDB16_RS21185 (LDB16_21200)	menA	4363215..4364141 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDB16_RS21190 (LDB16_21205)	rraA	4364234..4364719 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LDB16_RS21195 (LDB16_21210)	zapB	4364804..4365049 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=534731 LDB16_RS21165 WP_000644904.1 4359108..4360133(+) (cytR) [Escherichia coli strain EC2648-R2]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=534731 LDB16_RS21165 WP_000644904.1 4359108..4360133(+) (cytR) [Escherichia coli strain EC2648-R2]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628