Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6K04_RS01420 Genome accession   NZ_CP069442
Coordinates   274945..276306 (+) Length   453 a.a.
NCBI ID   WP_011136521.1    Uniprot ID   Q7NTS9
Organism   Chromobacterium violaceum strain FDAARGOS_1274     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 269945..281306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K04_RS01395 (I6K04_01395) hpnC 270503..271315 (+) 813 WP_081526963.1 squalene synthase HpnC -
  I6K04_RS01400 (I6K04_01400) hpnD 271386..272231 (+) 846 WP_081526965.1 presqualene diphosphate synthase HpnD -
  I6K04_RS01405 (I6K04_01405) hpnE 272228..273499 (+) 1272 WP_239161186.1 hydroxysqualene dehydroxylase HpnE -
  I6K04_RS01410 (I6K04_01410) - 273496..274257 (+) 762 WP_080762286.1 SDR family oxidoreductase -
  I6K04_RS01415 (I6K04_01415) - 274272..274805 (+) 534 WP_011136522.1 hypothetical protein -
  I6K04_RS01420 (I6K04_01420) radA 274945..276306 (+) 1362 WP_011136521.1 DNA repair protein RadA Machinery gene
  I6K04_RS01425 (I6K04_01425) - 276310..276873 (+) 564 WP_011136520.1 sigma-70 family RNA polymerase sigma factor -
  I6K04_RS01430 (I6K04_01430) - 276870..277067 (+) 198 WP_045050580.1 zf-HC2 domain-containing protein -
  I6K04_RS01435 (I6K04_01435) - 277131..278036 (+) 906 WP_139795140.1 hypothetical protein -
  I6K04_RS01440 (I6K04_01440) - 278082..278435 (-) 354 WP_011136517.1 DUF2325 domain-containing protein -
  I6K04_RS22960 - 278569..278694 (+) 126 WP_254894010.1 hypothetical protein -
  I6K04_RS01445 (I6K04_01445) - 278691..279482 (+) 792 WP_011136516.1 cystine ABC transporter substrate-binding protein -
  I6K04_RS01450 (I6K04_01450) - 279511..280479 (-) 969 WP_081576618.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48803.09 Da        Isoelectric Point: 6.8128

>NTDB_id=534726 I6K04_RS01420 WP_011136521.1 274945..276306(+) (radA) [Chromobacterium violaceum strain FDAARGOS_1274]
MAKNKTVFSCTECGGQSPKWQGQCPHCSAWNTLVEAVAAPAAASPRFQSWAANVTKVQKLSEVQTEETPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGRSRKVLYVSGEESAQQIALRASRLALDTSSVDLLAEICIENILETL
KREQPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLSMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPTANKPRQEIEGLKVLAVDRLDQAVEYCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=534726 I6K04_RS01420 WP_011136521.1 274945..276306(+) (radA) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGGCCAAGAACAAAACCGTATTCAGCTGCACCGAGTGCGGCGGACAGTCGCCCAAGTGGCAGGGCCAGTGCCCGCACTG
CAGCGCCTGGAACACGCTGGTGGAGGCGGTGGCCGCGCCGGCCGCCGCCAGTCCCCGCTTCCAGTCCTGGGCGGCCAACG
TCACCAAGGTGCAGAAACTGTCCGAGGTGCAGACCGAGGAAACCCCGCGCGATCCGTCCGGCATCGACGAACTGGACCGC
GTGCTGGGCGGCGGCATCGTGCGCGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GCAGGCCTTGTCTCAGATCGGCCGCAGCCGCAAGGTGCTCTACGTCTCCGGCGAGGAATCGGCCCAGCAGATCGCCTTGC
GCGCCTCGCGACTGGCGCTGGATACCAGCAGCGTCGATCTGCTGGCCGAGATCTGCATCGAGAACATTCTGGAAACGCTG
AAGCGAGAGCAGCCGGAAGTGGTGGTGATCGACTCGATCCAGACGCTTTACACCGAGCAGGTGACGTCGGCGCCGGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGCTGCTGGTCGGCC
ATGTGACCAAGGAAGGTTCGCTGGCCGGTCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAC
TCCCACTCCAGCTACCGCATGATACGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGACCGCGGCCTGAAGGGCGTGTCCAATCCGTCGGCCATCTTCCTTTCCTCGTATCGCGACGACGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAAATCCAGGCCTTGGTCGACGACTGCCACGGCTTCCAGCCC
AAGCGTCTCACCGTCGGCCTGGAGCAGAACCGCCTGTCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
TTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTCAAGATCAACGAGCCGGCCGCCGACCTCGCCATCATCCTGG
CCATGGTTTCGTCGCTGCGCAACAAGGCGCTGCCGGAAAAGCTGGTGGTGTTCGGCGAGGTGGGCCTGGCCGGCGAGGTG
CGGCCGGTGACGCGCGGCCAGGAACGCTTGAAGGAGGCGGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCCACCGCCAA
CAAGCCGCGGCAGGAAATCGAGGGCCTGAAGGTCTTGGCCGTGGACCGCCTGGATCAGGCGGTGGAATACTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NTS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.658

100

0.51
  radA Streptococcus mitis NCTC 12261

48.23

99.779

0.481
  radA Streptococcus mitis SK321

48.23

99.779

0.481
  radA Streptococcus pneumoniae Rx1

50

93.598

0.468
  radA Streptococcus pneumoniae D39

50

93.598

0.468
  radA Streptococcus pneumoniae R6

50

93.598

0.468
  radA Streptococcus pneumoniae TIGR4

50

93.598

0.468