Detailed information NTG0534699

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: I6J50_RS12270
• Genome accession: NZ_CP069440
• Coordinates: 2857455..2858828 (+)
• Length: 457 a.a.
• NCBI ID: WP_008144781.1
• Uniprot ID: -
• Organism: Phocaeicola coprophilus strain FDAARGOS_1220
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2852455..2863828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J50_RS12260 (I6J50_12260)	-	2853279..2854493 (-)	1215	WP_008144784.1	cofactor-independent phosphoglycerate mutase	-
I6J50_RS12265 (I6J50_12265)	thrA	2854523..2856955 (-)	2433	WP_008144783.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-
I6J50_RS12270 (I6J50_12270)	radA	2857455..2858828 (+)	1374	WP_008144781.1	DNA repair protein RadA	Machinery gene
I6J50_RS12275 (I6J50_12275)	-	2858958..2861777 (-)	2820	WP_040311573.1	pitrilysin family protein	-
I6J50_RS12280 (I6J50_12280)	-	2862043..2863332 (-)	1290	WP_008145511.1	IS1380 family transposase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50093.94 Da
• Isoelectric Point: 6.5882

>NTDB_id=534699 I6J50_RS12270 WP_008144781.1 2857455..2858828(+) (radA) [Phocaeicola coprophilus strain FDAARGOS_1220]
MAKEKTVYVCTNCGQESPKWAGKCPSCGQWNTFVEEVVRKEAPVAKHVAHGIESIRSKPQLLHEITAGEEQRIDMGDEEL
NRVLGGGLVEGSLTLIGGEPGIGKSTLILQTVLRLSQKKVLYISGEESARQLKLRADRIPHPANSDLLIACETSLEQIFT
NIKNTAPDLVIIDSIQTISTETIDSSPGSIVQVRECSAPILKFAKETGTPVILIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDHEGMSGVAIACAVEGIRPFLIEVQALVSTAAYG
MPQRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTEIEAGVCMAGEVGLSG
EIRPVNRIEQRISEAEKLGFTRMLIPKHNLQGLDRKKIKIELIPVRKVEEAFRQLFG

Nucleotide

• Length: 1374 bp

>NTDB_id=534699 I6J50_RS12270 WP_008144781.1 2857455..2858828(+) (radA) [Phocaeicola coprophilus strain FDAARGOS_1220]
ATGGCAAAGGAAAAAACAGTTTATGTCTGCACCAATTGTGGACAGGAATCTCCCAAATGGGCTGGAAAATGTCCGTCATG
CGGACAATGGAATACATTTGTAGAAGAAGTTGTACGCAAAGAAGCTCCTGTTGCAAAACATGTAGCACACGGAATTGAAT
CCATACGATCCAAACCTCAACTATTGCATGAAATCACCGCAGGAGAAGAACAACGTATTGACATGGGAGATGAAGAACTG
AACCGTGTATTGGGTGGAGGTTTGGTAGAAGGATCTCTAACCCTAATCGGTGGAGAACCTGGCATTGGAAAATCAACCCT
TATTCTACAAACTGTTTTACGCCTTTCCCAGAAAAAAGTACTTTACATTTCCGGAGAAGAAAGCGCACGTCAGCTCAAAC
TCCGTGCAGACCGTATTCCTCATCCGGCAAACTCAGACTTATTGATTGCCTGTGAAACGTCTTTGGAACAGATTTTCACC
AACATCAAAAATACGGCTCCTGATCTGGTCATTATCGACTCCATACAAACAATTTCGACAGAAACCATAGATTCTTCTCC
CGGAAGTATCGTGCAGGTTCGCGAATGTTCAGCGCCTATTTTAAAGTTTGCGAAAGAAACCGGAACGCCTGTTATCCTGA
TCGGACACATCAACAAAGAAGGAAGTATAGCGGGTCCTAAAGTTCTGGAGCACATTGTCGACACAGTGCTCCAATTTGAA
GGTGACCAACACTATATGTACCGTATCCTCCGCAGCATCAAAAACCGTTTTGGAAGTACAGCCGAACTAGGCATTTATGA
GATGCGTCAAGATGGTCTCCGTCAGGTAAGCAATCCTTCGGAACTATTACTGACCCAAGATCATGAAGGTATGAGTGGAG
TCGCAATCGCCTGTGCAGTTGAAGGCATACGTCCTTTCCTCATAGAAGTACAGGCTCTGGTCAGTACTGCAGCCTATGGG
ATGCCTCAGCGTTCAGCAACAGGATTCGACCTGAGACGTATGAATATGTTATTAGCGGTCTTGGAGAAAAGAGTAGGATT
CAAGTTAGCACAGAAAGACGTATTTCTGAACATCGCAGGCGGACTGAAAGTAAATGACCCGGCCATAGACCTTGCCGTCA
TCAGCGCCATTCTTTCCAGCAATATGGATACAGAAATTGAAGCTGGTGTATGTATGGCAGGCGAAGTAGGACTAAGTGGA
GAAATCCGTCCTGTTAATCGCATTGAACAACGCATCAGTGAAGCTGAAAAACTTGGATTCACCCGAATGCTGATTCCGAA
ACATAACTTACAAGGACTGGACAGAAAAAAAATAAAAATAGAACTTATTCCTGTAAGGAAGGTAGAAGAAGCCTTCCGGC
AGTTATTCGGATGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (343-429)

• AAA domain (AAA_25) (73-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.495	100	0.53
radA	Streptococcus mitis NCTC 12261	48.578	100	0.486
radA	Streptococcus pneumoniae Rx1	48.359	100	0.484
radA	Streptococcus pneumoniae D39	48.359	100	0.484
radA	Streptococcus pneumoniae R6	48.359	100	0.484
radA	Streptococcus pneumoniae TIGR4	48.359	100	0.484
radA	Streptococcus mitis SK321	48.14	100	0.481