Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J64_RS19330 Genome accession   NZ_CP069431
Coordinates   4632112..4633482 (+) Length   456 a.a.
NCBI ID   WP_008779514.1    Uniprot ID   A6LCT7
Organism   Parabacteroides distasonis strain FDAARGOS_1234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4627112..4638482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J64_RS19315 (I6J64_19315) - 4627454..4628326 (-) 873 WP_011966584.1 arginase family protein -
  I6J64_RS19320 (I6J64_19320) - 4628445..4630751 (+) 2307 WP_008779512.1 GH92 family glycosyl hydrolase -
  I6J64_RS20235 - 4630812..4630946 (-) 135 WP_005858250.1 hypothetical protein -
  I6J64_RS19325 (I6J64_19325) - 4631080..4632078 (+) 999 WP_008778111.1 isoaspartyl peptidase/L-asparaginase family protein -
  I6J64_RS19330 (I6J64_19330) radA 4632112..4633482 (+) 1371 WP_008779514.1 DNA repair protein RadA Machinery gene
  I6J64_RS19335 (I6J64_19335) - 4633496..4635100 (+) 1605 WP_011966583.1 NAD(P)/FAD-dependent oxidoreductase -
  I6J64_RS19340 (I6J64_19340) - 4635118..4636239 (+) 1122 WP_005858243.1 glycoside hydrolase family 43 protein -
  I6J64_RS19345 (I6J64_19345) - 4636233..4636622 (-) 390 WP_005858241.1 hypothetical protein -
  I6J64_RS19350 (I6J64_19350) - 4636635..4637444 (-) 810 WP_005858239.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49843.67 Da        Isoelectric Point: 6.6073

>NTDB_id=534655 I6J64_RS19330 WP_008779514.1 4632112..4633482(+) (radA) [Parabacteroides distasonis strain FDAARGOS_1234]
MAKTKTVYVCSNCGADSPKWLGKCPNCGEWNTYVEEIVTKELAVKRPVPGIMEGNKIRPVLLRDITTEEEARIDLKDDEL
NRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLTGLKTLYVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQ
AANIQPDLMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG
DQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNHEGLSGVAIAAAIEGVRPFLIETQALVSSAVYGT
PQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGE
IRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTAKSKIQIVQVKKVEEAFRQLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=534655 I6J64_RS19330 WP_008779514.1 4632112..4633482(+) (radA) [Parabacteroides distasonis strain FDAARGOS_1234]
ATGGCGAAAACAAAAACCGTATATGTCTGCTCTAACTGTGGCGCTGATTCCCCGAAATGGCTGGGTAAATGCCCGAATTG
TGGGGAGTGGAACACCTATGTAGAGGAGATCGTAACAAAGGAGCTTGCCGTGAAGCGGCCAGTTCCCGGTATTATGGAGG
GCAATAAGATCCGTCCGGTGTTATTGCGTGATATAACGACGGAAGAGGAGGCCCGTATCGATTTAAAAGATGATGAATTA
AATAGGGTCCTCGGCGGAGGCTTGGTGAAAGGCTCTTTGGTCTTGATCGGGGGAGAGCCGGGAATTGGAAAATCCACCTT
GGTCTTGCAAACCGTGTTGGGCTTGACAGGCTTGAAAACCCTATATGTCTCGGGCGAGGAGAGCAGTCGCCAGTTGAAAC
TCCGGGCGGACCGATTATCGCATGATAATCCGAACTGTTTCATCCTATGCGAGACGCATCTGGAACAGATTTTTACGCAA
GCGGCCAATATCCAGCCGGACTTGATGATCATAGATTCCATACAAACCATCTTTACGGAAGTTGTGGAATCTTCCCCCGG
CAGTGTTTCCCAAGTACGTGAGTGTAGTGCCGCTATCTTGAAATACGCCAAGGAAAGCGGTGTCCCGGTCTTATTGATCG
GCCATATCAATAAGGAAGGCAGTATCGCCGGTCCGAAGGTATTGGAGCATATCGTGGATACGGTGTTGCAGTTTGAGGGC
GATCAGCATTATATGTATCGTATCCTGCGGAGCATCAAGAACCGTTTTGGCAGTACGGCGGAACTAGGGATTTACGAGAT
GCGCCAGAACGGGCTTCGTGAGGTCAGCAATCCATCCGAGTTATTATTAACCCAGAATCATGAGGGACTGAGCGGTGTCG
CCATCGCCGCCGCTATCGAGGGGGTACGTCCTTTCTTGATCGAGACGCAAGCCTTGGTCAGCTCGGCGGTTTACGGTACG
CCGCAACGTAGCGCCACCGGATTCGATTTACGCCGAATGAATATGTTATTGGCGGTATTGGAGAAAAGGGCGGGTTTTAA
GTTGATCCAGAAAGATGTTTTCCTGAATATCGCCGGAGGTTTGAAAGTGAATGATCCGGCTATCGATTTGGCGGTAATCA
GCTCCATCCTTTCCTCTAGCTTGGATATCAGCATCGAGCCGGGTGTTTGTATGGCTGGCGAGGTGGGCTTGTCCGGAGAG
ATCCGTCCGGTCAACCGTATCGAGCAACGTATCTTGGAGGCGGAGAAGCTGGGTTTCTCCCGGATTATCATTCCGCATAA
TAATCTAAAAGGTTTCGATACGGCGAAGAGCAAGATTCAAATCGTACAGGTAAAGAAAGTGGAGGAAGCCTTTCGGCAAC
TATTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

AAA domain (AAA_25)

(69-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6LCT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.62

100

0.529
  radA Streptococcus mitis NCTC 12261

49.234

100

0.493
  radA Streptococcus pneumoniae Rx1

49.015

100

0.491
  radA Streptococcus pneumoniae D39

49.015

100

0.491
  radA Streptococcus pneumoniae R6

49.015

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.491
  radA Streptococcus mitis SK321

49.015

100

0.491