Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   JQN69_RS17805 Genome accession   NZ_CP069430
Coordinates   3629429..3630574 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain TB918     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624429..3635574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN69_RS17785 (JQN69_17785) - 3625326..3625754 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  JQN69_RS17790 (JQN69_17790) - 3625908..3626420 (+) 513 Protein_3464 bacteriocin biosynthesis protein AlbG -
  JQN69_RS17795 (JQN69_17795) - 3626427..3627803 (-) 1377 WP_094031367.1 YncE family protein -
  JQN69_RS17800 (JQN69_17800) - 3627843..3629198 (-) 1356 WP_015240776.1 YncE family protein -
  JQN69_RS17805 (JQN69_17805) rapF 3629429..3630574 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  JQN69_RS17810 (JQN69_17810) phrF 3630558..3630677 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JQN69_RS17815 (JQN69_17815) - 3630875..3631078 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  JQN69_RS17820 (JQN69_17820) - 3631092..3631295 (+) 204 WP_007407641.1 hypothetical protein -
  JQN69_RS17825 (JQN69_17825) - 3631330..3631515 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  JQN69_RS17830 (JQN69_17830) - 3631701..3631982 (+) 282 WP_007407643.1 hypothetical protein -
  JQN69_RS17835 (JQN69_17835) - 3632026..3632538 (+) 513 WP_094031368.1 stage II sporulation protein M -
  JQN69_RS17840 (JQN69_17840) - 3633129..3633347 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  JQN69_RS17845 (JQN69_17845) speB 3633515..3634387 (-) 873 WP_007614448.1 agmatinase -
  JQN69_RS17850 (JQN69_17850) speE 3634446..3635276 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=534641 JQN69_RS17805 WP_007407638.1 3629429..3630574(+) (rapF) [Bacillus velezensis strain TB918]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=534641 JQN69_RS17805 WP_007407638.1 3629429..3630574(+) (rapF) [Bacillus velezensis strain TB918]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564