Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JQN69_RS16850 Genome accession   NZ_CP069430
Coordinates   3439581..3440270 (-) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain TB918     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3434581..3445270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN69_RS16815 (JQN69_16815) fliW 3434671..3435102 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  JQN69_RS16820 (JQN69_16820) - 3435132..3435701 (-) 570 WP_007407476.1 DUF6470 family protein -
  JQN69_RS16825 (JQN69_16825) flgL 3435793..3436710 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  JQN69_RS16830 (JQN69_16830) flgK 3436722..3438239 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  JQN69_RS16835 (JQN69_16835) - 3438255..3438737 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JQN69_RS16840 (JQN69_16840) flgM 3438752..3439018 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JQN69_RS16845 (JQN69_16845) - 3439088..3439507 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  JQN69_RS16850 (JQN69_16850) comFC 3439581..3440270 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  JQN69_RS16855 (JQN69_16855) - 3440276..3440560 (-) 285 WP_007407481.1 competence protein ComFB -
  JQN69_RS16860 (JQN69_16860) comFA 3440618..3442003 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  JQN69_RS16865 (JQN69_16865) - 3442112..3442960 (-) 849 WP_094031329.1 DegV family protein -
  JQN69_RS16870 (JQN69_16870) degU 3443058..3443747 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JQN69_RS16875 (JQN69_16875) degS 3443824..3444987 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=534634 JQN69_RS16850 WP_197200179.1 3439581..3440270(-) (comFC) [Bacillus velezensis strain TB918]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=534634 JQN69_RS16850 WP_197200179.1 3439581..3440270(-) (comFC) [Bacillus velezensis strain TB918]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594