Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LDB15_RS12415 Genome accession   NZ_CP084207
Coordinates   2612623..2613069 (-) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli strain EC2648-R1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2607623..2618069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB15_RS12365 (LDB15_12370) sbmC 2608115..2608588 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  LDB15_RS12370 (LDB15_12375) yeeA 2608786..2609844 (+) 1059 WP_001200891.1 FUSC family protein -
  LDB15_RS12375 (LDB15_12380) tmaR 2610016..2610345 (+) 330 WP_000450409.1 DUF496 family protein -
  LDB15_RS12380 (LDB15_12385) - 2610446..2610628 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LDB15_RS12385 (LDB15_12390) - 2610700..2610828 (+) 129 Protein_2413 transposase domain-containing protein -
  LDB15_RS12390 (LDB15_12395) - 2611117..2611197 (-) 81 Protein_2414 hypothetical protein -
  LDB15_RS12395 (LDB15_12400) yeeW 2611243..2611437 (-) 195 WP_000988600.1 DUF5983 family protein -
  LDB15_RS12400 (LDB15_12405) cbtA 2611434..2611808 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  LDB15_RS12405 (LDB15_12410) cbeA 2611897..2612265 (-) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  LDB15_RS12410 (LDB15_12415) yeeT 2612339..2612560 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  LDB15_RS12415 (LDB15_12420) radC 2612623..2613069 (-) 447 WP_000187523.1 RadC family protein Machinery gene
  LDB15_RS12420 (LDB15_12425) yeeR 2613066..2614598 (-) 1533 WP_001350525.1 protein YeeR -
  LDB15_RS12425 (LDB15_12430) agn43 2614719..2617838 (-) 3120 WP_000820410.1 autotransporter adhesin Ag43 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=534634 LDB15_RS12415 WP_000187523.1 2612623..2613069(-) (radC) [Escherichia coli strain EC2648-R1-1]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=534634 LDB15_RS12415 WP_000187523.1 2612623..2613069(-) (radC) [Escherichia coli strain EC2648-R1-1]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419