Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   SCV20265_RS09440 Genome accession   NC_023149
Coordinates   2010616..2010945 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa SCV20265     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005616..2015945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCV20265_RS09425 (SCV20265_1905) - 2005907..2007112 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  SCV20265_RS09430 (SCV20265_1906) - 2007305..2008333 (+) 1029 WP_003116434.1 MraY family glycosyltransferase -
  SCV20265_RS09435 (SCV20265_1907) - 2008428..2010425 (+) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  SCV20265_RS09440 (SCV20265_1908) comEA/comE1 2010616..2010945 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  SCV20265_RS09450 (SCV20265_1909) - 2011162..2012358 (-) 1197 WP_023123096.1 amino acid aminotransferase -
  SCV20265_RS09455 (SCV20265_1910) uvrB 2012546..2014558 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=53462 SCV20265_RS09440 WP_003104586.1 2010616..2010945(+) (comEA/comE1) [Pseudomonas aeruginosa SCV20265]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=53462 SCV20265_RS09440 WP_003104586.1 2010616..2010945(+) (comEA/comE1) [Pseudomonas aeruginosa SCV20265]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment