Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JQN69_RS01970 Genome accession   NZ_CP069430
Coordinates   396180..397328 (+) Length   382 a.a.
NCBI ID   WP_012116798.1    Uniprot ID   A3KLC9
Organism   Bacillus velezensis strain TB918     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 391180..402328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN69_RS01950 (JQN69_01950) - 391577..392260 (-) 684 WP_042634822.1 ABC transporter ATP-binding protein -
  JQN69_RS01955 (JQN69_01955) - 392275..393711 (-) 1437 WP_094031501.1 ABC transporter permease -
  JQN69_RS01960 (JQN69_01960) - 393924..394607 (+) 684 WP_007410267.1 response regulator transcription factor -
  JQN69_RS01965 (JQN69_01965) - 394594..396027 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  JQN69_RS01970 (JQN69_01970) rapC 396180..397328 (+) 1149 WP_012116798.1 Rap family tetratricopeptide repeat protein Regulator
  JQN69_RS01975 (JQN69_01975) phrC 397312..397431 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JQN69_RS01980 (JQN69_01980) - 397579..397674 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  JQN69_RS01985 (JQN69_01985) - 397769..399133 (-) 1365 WP_094031502.1 aspartate kinase -
  JQN69_RS01990 (JQN69_01990) ceuB 399547..400500 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  JQN69_RS01995 (JQN69_01995) - 400490..401437 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  JQN69_RS02000 (JQN69_02000) - 401431..402189 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45490.68 Da        Isoelectric Point: 4.9916

>NTDB_id=534579 JQN69_RS01970 WP_012116798.1 396180..397328(+) (rapC) [Bacillus velezensis strain TB918]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=534579 JQN69_RS01970 WP_012116798.1 396180..397328(+) (rapC) [Bacillus velezensis strain TB918]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGATTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

56.842

99.476

0.565