Detailed information NTG0053457

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SCV20265_RS07085
• Genome accession: NC_023149
• Coordinates: 1503499..1504503 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa SCV20265
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1498499..1509503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCV20265_RS07055 (SCV20265_1427)	fghA	1498591..1499442 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
SCV20265_RS07060 (SCV20265_1428)	ispF	1499513..1499986 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SCV20265_RS07065 (SCV20265_1429)	truD	1499983..1501050 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
SCV20265_RS07070 (SCV20265_1430)	surE	1501038..1501787 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
SCV20265_RS07075 (SCV20265_1431)	-	1501820..1502455 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
SCV20265_RS07080	-	1502501..1503394 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
SCV20265_RS07085 (SCV20265_1433)	rpoS	1503499..1504503 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
SCV20265_RS07090 (SCV20265_1434)	fdxA	1504930..1505253 (-)	324	WP_003119354.1	ferredoxin FdxA	-
SCV20265_RS07095 (SCV20265_1435)	mutS	1505320..1507887 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
SCV20265_RS07100 (SCV20265_1437)	-	1508013..1509020 (-)	1008	WP_017148387.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=53457 SCV20265_RS07085 WP_003113871.1 1503499..1504503(+) (rpoS) [Pseudomonas aeruginosa SCV20265]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=53457 SCV20265_RS07085 WP_003113871.1 1503499..1504503(+) (rpoS) [Pseudomonas aeruginosa SCV20265]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653