Detailed information NTG0534569

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDB14_RS21155
• Genome accession: NZ_CP084205
• Coordinates: 4358144..4359169 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC2648-R1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4353144..4364169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDB14_RS21135 (LDB14_21150)	metJ	4354205..4354522 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LDB14_RS21140 (LDB14_21155)	yiiX	4354706..4355314 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LDB14_RS21145 (LDB14_21160)	rpmE	4355375..4355587 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LDB14_RS21150 (LDB14_21165)	priA	4355790..4357988 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LDB14_RS21155 (LDB14_21170)	cytR	4358144..4359169 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LDB14_RS21160 (LDB14_21175)	ftsN	4359261..4360220 (+)	960	WP_000068828.1	cell division protein FtsN	-
LDB14_RS21165 (LDB14_21180)	hslV	4360313..4360843 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LDB14_RS21170 (LDB14_21185)	hslU	4360853..4362184 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LDB14_RS21175 (LDB14_21190)	menA	4362251..4363177 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDB14_RS21180 (LDB14_21195)	rraA	4363270..4363755 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LDB14_RS21185 (LDB14_21200)	zapB	4363840..4364085 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=534569 LDB14_RS21155 WP_000644904.1 4358144..4359169(+) (cytR) [Escherichia coli strain EC2648-R1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=534569 LDB14_RS21155 WP_000644904.1 4358144..4359169(+) (cytR) [Escherichia coli strain EC2648-R1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628