Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JQM34_RS01875 Genome accession   NZ_CP069427
Coordinates   404123..404932 (+) Length   269 a.a.
NCBI ID   WP_200371377.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 399123..409932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS01855 (JQM34_000382) pta 399780..400754 (+) 975 WP_084859882.1 phosphate acetyltransferase -
  JQM34_RS01860 (JQM34_000383) mutY 400837..402015 (+) 1179 WP_200371371.1 A/G-specific adenine glycosylase -
  JQM34_RS01865 (JQM34_000384) micA 402072..402779 (+) 708 WP_200371373.1 response regulator YycF Regulator
  JQM34_RS01870 (JQM34_000385) micB 402772..404121 (+) 1350 WP_200371375.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JQM34_RS01875 (JQM34_000386) vicX 404123..404932 (+) 810 WP_200371377.1 MBL fold metallo-hydrolase Regulator
  JQM34_RS01880 (JQM34_000387) - 405072..406367 (+) 1296 WP_200371379.1 AAA family ATPase -
  JQM34_RS01885 (JQM34_000388) - 406364..406987 (+) 624 WP_200371381.1 retron system putative HNH endonuclease -
  JQM34_RS01890 (JQM34_000389) - 407153..408382 (-) 1230 WP_200371383.1 transposase -
  JQM34_RS01895 (JQM34_000390) - 408467..408814 (-) 348 WP_200371385.1 thioredoxin -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29931.92 Da        Isoelectric Point: 6.3426

>NTDB_id=534504 JQM34_RS01875 WP_200371377.1 404123..404932(+) (vicX) [Streptococcus oralis strain SF100]
MSEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKIYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=534504 JQM34_RS01875 WP_200371377.1 404123..404932(+) (vicX) [Streptococcus oralis strain SF100]
ATGAGTGAAAAAGGCTTTAAATACAGTATTTTAGCATCAGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAAATCCTAGTAGATGCAGGCCTGTCTGGTAAGAAAATTACAAGTCTGCTAGCTGAAATCAATCGCAAACCAGAAGATC
TGGATGCGATTTTGATTACGCATGAGCACTCAGACCATATCCATGGAGTCGGTGTCTTGGCTCGCAAATATGGTATGGAT
CTTTACGCCAATGAAAAGACTTGGCAGGCTATGGAAAATAGCAAGTACCTCGGTAAGGTGGATTCATCGCAGAAACACAT
TTTTGAAATGGGAAAAACCAAAACTTTTGGCGATATCGACATCGAGAGTTTTGGGGTTAGTCATGATGCCGCAGCACCCC
AGTTTTATCGCTTTATGAAGGATGATAAGAGTTTTGTCATGTTGACTGACACAGGTTATGTTAGTGATCGTATGGCAGGA
ATTGTTGAGAATGCTGACGGTTATCTCATCGAATCCAACCACGACGTGGAAATCTTACGAGCTGGATCTTATGCTTGGCG
ACTCAAACAACGAATCCTATCGGATCTCGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGCACTAAGAAAATCTACCTTGGGCATTTATCTAAGGAGAACAATATCAAGGAACTGGCTCACATGACCATGGTCAAT
CAGCTAGCACAAGCTGATCTGGGAGTTGGGGTAGACTTTAAGATATATGATACCTCACCAGATACCGCAACACCATTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.81

100

0.788