Detailed information NTG0534490

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JYE50_RS12025
• Genome accession: NZ_CP069421
• Coordinates: 2606401..2607771 (-)
• Length: 456 a.a.
• NCBI ID: WP_084097628.1
• Uniprot ID: -
• Organism: Aristaeella lactis strain WTE2008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2601401..2612771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYE50_RS12015 (JYE50_12135)	-	2603183..2605006 (+)	1824	WP_366212569.1	ABC transporter ATP-binding protein	-
JYE50_RS12020 (JYE50_12140)	-	2605170..2606252 (-)	1083	WP_084097627.1	PIN/TRAM domain-containing protein	-
JYE50_RS12025 (JYE50_12145)	radA	2606401..2607771 (-)	1371	WP_084097628.1	DNA repair protein RadA	Machinery gene
JYE50_RS12030 (JYE50_12150)	-	2608222..2609395 (-)	1174	Protein_2354	IS110 family transposase	-
JYE50_RS12035 (JYE50_12155)	-	2609958..2612594 (-)	2637	WP_084096256.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 48769.06 Da
• Isoelectric Point: 7.4560

>NTDB_id=534490 JYE50_RS12025 WP_084097628.1 2606401..2607771(-) (radA) [Aristaeella lactis strain WTE2008]
MAKVKSTYACTACGYESPRWVGRCPGCGAWNTLEESLQAVPEKASGKIAANQRPGTGAKPLALKDIPEDITVRTGTGISE
LDRVLGGGIVEGGLILIGGDPGIGKSTLLLQVCDHLAKSGKRTLYISGEESARQIKLRAKRLGIESDIYVLAENALDAIE
EKIRELQPDTAVIDSIQTMYRPEMASAPGSVSQIREGTSLIMRLCKETGTSVFLVGHVTKDGAIAGPRMLEHMVDVVLYF
EGDRQQDYRLLRAVKNRFGSVNELGVFRMTGQGMQVVENPSEELLSHRAKGASGSTVFCGIEGSRPLLCDVQSLTSPTFY
GTPRRAVNGADSGRVAMLLAVLEKRANQRTYNQDVYINVAGGLELSEPAADLALCVAVASSLKEKPVGPDIAVMGEVGLA
GEVRTVPQCERRISECARLGFTTIIIPRSNAQRIKAPEGVRVIGVDTVAQALSVVF

Nucleotide

• Length: 1371 bp

>NTDB_id=534490 JYE50_RS12025 WP_084097628.1 2606401..2607771(-) (radA) [Aristaeella lactis strain WTE2008]
ATGGCAAAAGTCAAAAGCACCTACGCATGCACCGCCTGCGGCTATGAAAGCCCCCGGTGGGTCGGACGCTGTCCGGGCTG
CGGCGCGTGGAATACTTTGGAAGAAAGCCTGCAGGCTGTCCCGGAGAAAGCCTCCGGCAAGATTGCCGCGAACCAGCGGC
CGGGTACCGGTGCGAAACCTCTTGCCCTGAAAGATATTCCGGAAGATATCACCGTGCGAACCGGCACCGGGATCAGCGAG
CTGGACCGGGTTCTGGGCGGCGGTATCGTAGAGGGCGGCCTGATCCTGATCGGCGGCGATCCGGGTATCGGTAAGAGCAC
GCTGCTGCTCCAGGTCTGCGATCATCTGGCCAAAAGCGGAAAGCGTACGCTGTATATCAGCGGCGAAGAATCCGCCCGGC
AGATCAAGCTGCGCGCGAAACGGCTTGGGATCGAAAGCGATATCTACGTCCTGGCGGAGAACGCCCTGGACGCCATTGAG
GAAAAGATCCGGGAGCTCCAGCCGGACACCGCTGTGATCGACAGTATCCAGACCATGTATCGTCCGGAAATGGCCAGTGC
TCCCGGAAGCGTCAGCCAGATACGGGAAGGCACAAGCCTGATCATGCGCCTGTGCAAGGAAACCGGGACCAGCGTCTTCC
TGGTGGGACATGTGACCAAGGACGGCGCCATTGCCGGCCCGCGGATGCTGGAGCATATGGTGGACGTGGTTCTGTACTTT
GAGGGAGACCGGCAGCAGGATTACCGCCTGCTGCGGGCTGTGAAAAACCGTTTCGGTTCCGTAAATGAACTCGGTGTGTT
CCGGATGACCGGACAGGGTATGCAGGTAGTGGAAAACCCCAGTGAGGAACTGCTGAGCCACCGGGCCAAGGGAGCCAGCG
GAAGCACCGTTTTCTGCGGAATTGAAGGCAGCCGTCCGCTGCTGTGCGACGTCCAGTCGCTTACCAGTCCCACTTTCTAC
GGAACGCCCCGCCGGGCCGTAAACGGTGCGGACAGCGGACGGGTCGCAATGCTGCTGGCCGTCCTTGAAAAACGTGCCAA
CCAGCGGACCTATAACCAGGATGTATATATCAACGTTGCCGGCGGACTGGAGCTCAGCGAGCCTGCCGCGGACCTTGCCC
TGTGCGTGGCGGTGGCTTCCAGTCTGAAAGAAAAACCTGTCGGCCCCGACATCGCCGTGATGGGCGAAGTCGGCCTGGCG
GGTGAAGTACGCACCGTGCCCCAGTGTGAGCGGCGCATTTCCGAATGTGCCCGCCTGGGTTTCACCACCATCATCATTCC
CCGGTCCAACGCCCAGCGGATCAAAGCGCCGGAAGGTGTACGGGTGATCGGTGTGGATACCGTCGCACAGGCGTTAAGCG
TAGTGTTCTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (349-440)

• AAA domain (AAA_25) (78-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.203	99.561	0.52
radA	Streptococcus mitis NCTC 12261	50.328	100	0.504
radA	Streptococcus pneumoniae Rx1	50.328	100	0.504
radA	Streptococcus pneumoniae D39	50.328	100	0.504
radA	Streptococcus pneumoniae R6	50.328	100	0.504
radA	Streptococcus pneumoniae TIGR4	50.328	100	0.504
radA	Streptococcus mitis SK321	50.328	100	0.504