Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KBP30_RS27240 Genome accession   NZ_CP084203
Coordinates   6348884..6350812 (-) Length   642 a.a.
NCBI ID   WP_189294143.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6343884..6355812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS27225 (KBP30_27235) - 6345642..6346860 (+) 1219 Protein_5367 RNA polymerase sigma factor -
  KBP30_RS27230 (KBP30_27240) - 6346867..6348126 (-) 1260 WP_230920777.1 hypothetical protein -
  KBP30_RS27235 (KBP30_27245) - 6348192..6348701 (-) 510 WP_189294144.1 SigE family RNA polymerase sigma factor -
  KBP30_RS27240 (KBP30_27250) rcrQ 6348884..6350812 (-) 1929 WP_189294143.1 ABC transporter ATP-binding protein Regulator
  KBP30_RS27245 (KBP30_27255) rcrP 6350812..6352545 (-) 1734 WP_189294142.1 ABC transporter ATP-binding protein Regulator
  KBP30_RS27250 (KBP30_27260) - 6352646..6354085 (-) 1440 WP_189294141.1 FGGY family carbohydrate kinase -
  KBP30_RS27255 (KBP30_27265) - 6354149..6354454 (-) 306 WP_189294140.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69918.43 Da        Isoelectric Point: 6.3385

>NTDB_id=534468 KBP30_RS27240 WP_189294143.1 6348884..6350812(-) (rcrQ) [Streptomyces sp. Go40/10 strain Go 40/10]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLVAQFRPERFTIYGLLACVVISVGLNVIGPKILGRATDLVFAGIIGRRMPDGA
SKEQVLDSMRERGQGRVADMLKGTDFTPGKGIDFGAVGDVLLLALGTFLVAGLLMAIATRLVNRAVNRTMYRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQQFAEQNEALYQAAFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPEELRGRVRLE
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIRRMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGAAREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAAGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=534468 KBP30_RS27240 WP_189294143.1 6348884..6350812(-) (rcrQ) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCAGTTCCGACCGGAACGGTTCACGATCTACGGCCTGCTGGCCTGCGTGGTCATCAGCGTGGGCCTCAACG
TGATCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTGTTCGCCGGCATCATCGGCCGGCGGATGCCGGACGGCGCC
AGCAAGGAGCAGGTGCTCGACTCCATGCGCGAGCGCGGCCAGGGCCGGGTCGCGGACATGCTGAAGGGCACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGTGCCGTCGGAGACGTCCTGCTCCTCGCGCTCGGCACGTTCCTGGTCGCGGGCCTGC
TGATGGCGATCGCGACCCGGCTGGTGAACCGGGCCGTGAACCGCACGATGTACCGGCTGCGGGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACCCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGGCAGGATGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACCAGGCCG
CGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTCGTGGGCGGTCTTCGTGTCGCGTCCGGCTCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCCGGGTGAGCGGCCGGAGGAACTGCGCGGGCGGGTGCGCCTGGAG
CACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCGGGGCACACGGTGGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCGGGCGGCCGGA
TCACCCTGGACGGGGTCGACATCCGCAGGATGACCCGGGACGAACTGCGGTCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCGCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCCCGCGCCGCGCACGCGGACCGGTTCATCCGCACCCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGCACCG
GCGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACGCGGACGGAGGTCCTGATCCAGAAGGCGATGGCCAAGCTGGCGGCGGGCCGTACGTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGCGACGCGGACACCATCCTCGTGATGGAGAACGGGTCCATCGTGGAACAGG
GCGCGCACGCCGAGCTGTTGGCGGCGGACGGGGCGTACGCCCGGCTGTACAAGGCCCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.262

0.393