Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KBP30_RS25500 Genome accession   NZ_CP084203
Coordinates   5940900..5941955 (+) Length   351 a.a.
NCBI ID   WP_230920566.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5935900..5946955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS25485 (KBP30_25490) - 5937353..5938237 (-) 885 WP_189294439.1 carbohydrate ABC transporter permease -
  KBP30_RS25490 (KBP30_25495) - 5938234..5939259 (-) 1026 WP_230920564.1 sugar ABC transporter permease -
  KBP30_RS25495 (KBP30_25500) - 5939256..5940587 (-) 1332 WP_230920565.1 ABC transporter substrate-binding protein -
  KBP30_RS25500 (KBP30_25505) cytR 5940900..5941955 (+) 1056 WP_230920566.1 LacI family DNA-binding transcriptional regulator Regulator
  KBP30_RS25510 (KBP30_25515) orn 5942246..5942848 (-) 603 WP_189294435.1 oligoribonuclease -
  KBP30_RS25515 (KBP30_25520) - 5942987..5944204 (-) 1218 WP_189294434.1 helix-turn-helix domain-containing protein -
  KBP30_RS25520 (KBP30_25525) - 5944584..5944853 (-) 270 WP_230920567.1 hypothetical protein -
  KBP30_RS25525 (KBP30_25530) - 5945169..5945696 (+) 528 WP_189294432.1 universal stress protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37698.54 Da        Isoelectric Point: 6.4236

>NTDB_id=534464 KBP30_RS25500 WP_230920566.1 5940900..5941955(+) (cytR) [Streptomyces sp. Go40/10 strain Go 40/10]
MASHGGRGRSGGRPTLEEVAARAGVGRGTVSRVINGSPRVSDATRAAVEAAVAELGYVPNTAARALAANRTDAIALVVPE
PETRFFAEPYFSDMLRGVGAELADTEMQLLLIFAGSDRERQRLAQYLAAHRVDGVLLVSVHADDPLPDLLSQLEIPAVIS
GPRSAAESLTSVDSDNYGGARSAVEHLLGRGRRRIAHITGRLDVYGAQRRVDGYRDALRDAGHPADELLIEPGDFTEEGG
RRAMRLLLAHHPDLDAVFAGSDVMAAGARQVLREAGRRIPDDVALVGYDDSAIARHMDPPLTSVRQPIQEMGRAMIDLLQ
TEIADRRPPASRGLDRRRAVLPTELVVRASS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=534464 KBP30_RS25500 WP_230920566.1 5940900..5941955(+) (cytR) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGGCAAGCCACGGAGGGCGGGGCCGGAGCGGAGGGCGGCCCACGCTCGAAGAGGTCGCCGCCCGGGCCGGGGTCGGACG
GGGCACGGTCTCCCGGGTGATCAACGGCTCGCCCCGGGTCAGCGACGCCACCCGCGCCGCGGTCGAGGCGGCCGTCGCCG
AGCTGGGGTACGTCCCCAACACCGCCGCCCGCGCCCTCGCGGCCAACCGCACCGACGCCATCGCCCTGGTGGTCCCCGAG
CCGGAGACCCGCTTCTTCGCGGAACCGTACTTCTCGGACATGCTGCGGGGTGTGGGCGCCGAACTCGCCGACACCGAGAT
GCAGCTGCTGCTGATCTTCGCCGGCAGCGACCGCGAGCGGCAGCGCCTCGCGCAGTACCTGGCGGCCCACCGCGTGGACG
GCGTCCTCCTGGTCTCCGTCCACGCCGACGACCCCCTCCCCGACCTGTTGTCCCAGCTGGAGATCCCGGCCGTGATCAGC
GGCCCGCGCTCGGCGGCCGAGTCGCTCACCTCGGTGGACTCCGACAACTACGGGGGCGCCCGCTCGGCGGTGGAGCACCT
GCTGGGCCGGGGCCGCCGCCGCATCGCGCACATCACCGGCCGCCTGGACGTCTACGGCGCCCAGCGCCGCGTCGACGGCT
ACCGCGACGCCCTGCGCGACGCGGGCCACCCGGCGGACGAGCTCCTGATCGAGCCGGGCGACTTCACCGAGGAGGGCGGC
CGCCGCGCGATGCGGCTCCTCCTTGCTCACCACCCCGACCTGGACGCGGTCTTCGCCGGCTCGGACGTGATGGCGGCCGG
TGCCCGGCAGGTGCTGCGCGAGGCGGGCCGCCGCATCCCCGACGACGTCGCCCTGGTCGGCTACGACGACTCCGCCATCG
CCCGCCACATGGATCCGCCGCTCACCAGCGTCCGCCAGCCCATACAGGAGATGGGCCGCGCGATGATCGACCTCCTCCAG
ACGGAGATCGCCGACCGCCGCCCGCCCGCGTCCCGCGGCCTGGACCGCCGCCGGGCGGTGCTCCCCACGGAACTGGTGGT
GCGGGCGTCGTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-60)

Periplasmic binding protein-like domain (Peripla_BP_3)

(184-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.888

98.86

0.365