Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KBP30_RS20860 Genome accession   NZ_CP084203
Coordinates   4910879..4912000 (+) Length   373 a.a.
NCBI ID   WP_189296609.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4905879..4917000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS20850 (KBP30_20850) dnaN 4908590..4909720 (+) 1131 WP_189296613.1 DNA polymerase III subunit beta -
  KBP30_RS20855 (KBP30_20855) gnd 4909950..4910825 (+) 876 WP_230920015.1 decarboxylating 6-phosphogluconate dehydrogenase -
  KBP30_RS20860 (KBP30_20860) recF 4910879..4912000 (+) 1122 WP_189296609.1 DNA replication/repair protein RecF Machinery gene
  KBP30_RS20865 (KBP30_20865) - 4911997..4912530 (+) 534 WP_189296608.1 DciA family protein -
  KBP30_RS20870 (KBP30_20870) gyrB 4912927..4915008 (+) 2082 WP_305809404.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40684.35 Da        Isoelectric Point: 7.2534

>NTDB_id=534453 KBP30_RS20860 WP_189296609.1 4910879..4912000(+) (recF) [Streptomyces sp. Go40/10 strain Go 40/10]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAVIRAQVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKTAALARRHGGRSMDLSTLDVWDQHLARAGAELLAQRMDLIAALQPLADKAYEQLAPGGGPVALEYKPSAPGEAH
TREELYAQLTAALAEARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLILD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPHVLAGARYSVADGAVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=534453 KBP30_RS20860 WP_189296609.1 4910879..4912000(+) (recF) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGCATGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTTCCGCTCGACCCGGGCGTCACCGC
TTTCGTCGGCCCCAACGGGCAGGGGAAGACCAACCTGGTGGAGGCGGTCGGGTATCTGGCGACGCTCGGCAGCCACCGGG
TCGCCTCCGACGCGCCCCTGGTGCGCATGGGCGCCGAGCGGGCGGTGATCCGGGCACAGGTCCGGCAGGGCGAGCGGCAG
CAGCTGATCGAGCTGGAGCTGAACCCGGGGAAGGCCAACCGCGCCCGCATCAACCGGTCCTCGCAGGTCAGACCGCGGGA
CGTGCTGGGGATCGTACGGACCGTGCTGTTCGCGCCCGAGGACCTGGCCCTCGTCAAGGGGGACCCGGGTGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACCGCGCGGTCGCCGCGGATGGCGGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGACGGCCGCTCTCGCGCGGCGGCACGGCGGGCGCTCGATGGACCTGTCCACGCTCGACGTCTG
GGACCAGCACCTCGCGCGCGCGGGTGCGGAGCTGCTCGCGCAGCGGATGGACCTGATCGCCGCGCTGCAGCCGCTGGCCG
ACAAGGCGTACGAGCAGCTGGCTCCCGGGGGCGGCCCGGTGGCGCTGGAGTACAAACCGTCGGCGCCGGGCGAGGCGCAC
ACGCGCGAGGAGCTGTACGCCCAGTTGACGGCGGCCCTGGCAGAGGCGCGGAAGCAGGAGATCGAGCGGGGTGTCACCCT
CGTCGGTCCGCACCGGGACGACCTGGTGCTCAAGCTCGGTCAGCTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCCTACGCGCTCGCGCTGCGGCTGGCCTCGTACGACCTGCTGCGTGCCGAGGGCAACGAGCCGGTGCTGATCCTGGAC
GACGTCTTCGCCGAGCTGGACGCCCGCCGCCGCGAGCGGCTGGCGGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
GGCGGCTGTGGACGACGACGTGCCGCACGTGCTGGCCGGTGCCCGGTACTCGGTGGCGGACGGGGCGGTGGAGCGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.418

94.906

0.365