Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ICR95_RS11570 Genome accession   NZ_CP069397
Coordinates   2203465..2203881 (+) Length   138 a.a.
NCBI ID   WP_272816230.1    Uniprot ID   -
Organism   Priestia megaterium strain CDC 2008724129     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2198465..2208881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICR95_RS11550 (ICR95_11550) - 2198845..2199516 (-) 672 WP_028414985.1 response regulator transcription factor -
  ICR95_RS11555 (ICR95_11555) - 2199842..2200660 (+) 819 WP_028414986.1 phytoene/squalene synthase family protein -
  ICR95_RS11560 (ICR95_11560) - 2200696..2202645 (-) 1950 WP_028414987.1 FUSC family protein -
  ICR95_RS11565 (ICR95_11565) - 2202802..2203062 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  ICR95_RS11570 (ICR95_11570) nucA/comI 2203465..2203881 (+) 417 WP_272816230.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ICR95_RS11575 (ICR95_11575) comJ 2203917..2204324 (+) 408 WP_098113593.1 competence protein ComJ -
  ICR95_RS11580 (ICR95_11580) - 2204426..2205016 (-) 591 WP_028414990.1 CPBP family intramembrane glutamic endopeptidase -
  ICR95_RS11585 (ICR95_11585) helD 2205405..2207723 (-) 2319 WP_028414991.1 RNA polymerase recycling motor HelD -
  ICR95_RS29315 - 2207967..2208092 (-) 126 WP_014458690.1 hypothetical protein -
  ICR95_RS11590 (ICR95_11590) - 2208233..2208748 (-) 516 WP_028414992.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15125.74 Da        Isoelectric Point: 4.2601

>NTDB_id=534443 ICR95_RS11570 WP_272816230.1 2203465..2203881(+) (nucA/comI) [Priestia megaterium strain CDC 2008724129]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAITAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=534443 ICR95_RS11570 WP_272816230.1 2203465..2203881(+) (nucA/comI) [Priestia megaterium strain CDC 2008724129]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTACTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAACCGAGAAGAATCGCTGAAAGGATAC
CCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594