Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KBP30_RS11915 Genome accession   NZ_CP084203
Coordinates   2886405..2887184 (+) Length   259 a.a.
NCBI ID   WP_030342891.1    Uniprot ID   A0ABT2B7X4
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2881405..2892184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS11900 (KBP30_11905) - 2881432..2881965 (+) 534 WP_230919001.1 TerD family protein -
  KBP30_RS11905 (KBP30_11910) - 2882207..2885101 (-) 2895 WP_230919002.1 vitamin B12-dependent ribonucleotide reductase -
  KBP30_RS11910 (KBP30_11915) nrdR 2885267..2885818 (-) 552 WP_230919003.1 transcriptional regulator NrdR -
  KBP30_RS11915 (KBP30_11920) dinR/lexA 2886405..2887184 (+) 780 WP_030342891.1 transcriptional repressor LexA Regulator
  KBP30_RS11920 (KBP30_11925) - 2887369..2889360 (-) 1992 WP_230919004.1 ATP-dependent DNA helicase -
  KBP30_RS11925 (KBP30_11930) - 2889863..2890633 (-) 771 WP_230919005.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28047.80 Da        Isoelectric Point: 7.0666

>NTDB_id=534428 KBP30_RS11915 WP_030342891.1 2886405..2887184(+) (dinR/lexA) [Streptomyces sp. Go40/10 strain Go 40/10]
MTTTADSATITAQDRSQGRVEPVHAMNEATNPEAHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVTVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=534428 KBP30_RS11915 WP_030342891.1 2886405..2887184(+) (dinR/lexA) [Streptomyces sp. Go40/10 strain Go 40/10]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGAGTCGAGCCGGTACACGCGATGAA
CGAAGCCACGAATCCCGAGGCACACAAGCGCTCCCTGCCGGGGCGACCTCCAGGTATCCGGGCGGACAGCTCCGGACTCA
CCGACCGGCAGCGCCGGGTCATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTTTCCAGCACGTCCTCCGTCGCTCACCAGCTGATGGCACTGGAACGCAAGGGCTTCCTGCGCCG
CGACCCACACCGCCCGCGCGCGTACGAGGTGCGCGGATCGGACCAGGCCGTCACCGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCCTACGTCCCGCTGGTCGGCCGTATCGCGGCCGGCGGCCCGATCCTCGCGGAGGAGTCCGTCGAGGAC
GTCTTCCCTCTGCCCCGCCAGCTCGTCGGTGACGGTGAACTCTTCGTCCTCAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCTGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAAGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTCCTCCCCCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATTCTCGGCAAGGTCGTCGCAGTGCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378