Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JRI60_RS42230 Genome accession   NZ_CP069396
Coordinates   10619390..10620751 (+) Length   453 a.a.
NCBI ID   WP_204221724.1    Uniprot ID   -
Organism   Archangium violaceum strain SDU8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 10614390..10625751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRI60_RS42205 (JRI60_42205) - 10615319..10615636 (-) 318 WP_239470048.1 hypothetical protein -
  JRI60_RS42210 (JRI60_42210) bioD 10615701..10616342 (-) 642 WP_239470049.1 dethiobiotin synthase -
  JRI60_RS42215 (JRI60_42215) bioF 10616490..10617614 (-) 1125 WP_239470050.1 8-amino-7-oxononanoate synthase -
  JRI60_RS42220 (JRI60_42220) bioB 10617719..10618750 (-) 1032 WP_204221722.1 biotin synthase BioB -
  JRI60_RS42225 (JRI60_42225) - 10618907..10619176 (-) 270 WP_204221723.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  JRI60_RS42230 (JRI60_42230) radA 10619390..10620751 (+) 1362 WP_204221724.1 DNA repair protein RadA Machinery gene
  JRI60_RS42235 (JRI60_42235) - 10620879..10621760 (+) 882 WP_239470051.1 DUF2381 family protein -
  JRI60_RS42240 (JRI60_42240) - 10621776..10622264 (+) 489 WP_204221726.1 serine/threonine protein kinase -
  JRI60_RS42245 (JRI60_42245) - 10622295..10623098 (-) 804 WP_204221727.1 hypothetical protein -
  JRI60_RS42250 (JRI60_42250) - 10623125..10623772 (-) 648 WP_204221728.1 hypothetical protein -
  JRI60_RS42255 (JRI60_42255) - 10624358..10625155 (-) 798 WP_204221729.1 hypothetical protein -
  JRI60_RS42260 (JRI60_42260) - 10625341..10625748 (+) 408 WP_204221730.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48108.34 Da        Isoelectric Point: 6.8241

>NTDB_id=534423 JRI60_RS42230 WP_204221724.1 10619390..10620751(+) (radA) [Archangium violaceum strain SDU8]
MAKAKTHYTCQACGYQSAKWLGKCPDCGAWSSLVEETEAKVDEKRPAWGASGGASKPVRLREVSGEQEERRKTGIAEFDR
VLGGGVVDGSLVLLGGDPGIGKSTLLLSALDRLGRGGPVLYVSGEESLRQTKMRAERLRVESADIHLFAETDADRVLTVA
EGLKPRALVVDSIQTMYLPELGSAPGSISQVREVAGRFMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLMEVPDPSALFLAERPAGKAGSVVTCTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLEAHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRAIIPKGSARRLEDTKLEVVGVETLSEALGAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=534423 JRI60_RS42230 WP_204221724.1 10619390..10620751(+) (radA) [Archangium violaceum strain SDU8]
ATGGCGAAGGCGAAGACGCACTACACGTGTCAGGCGTGCGGGTACCAGTCGGCGAAGTGGTTGGGGAAGTGCCCCGACTG
CGGCGCGTGGAGCTCGCTGGTGGAGGAGACCGAGGCGAAGGTGGACGAGAAGCGCCCGGCGTGGGGGGCGTCGGGAGGGG
CGTCCAAGCCGGTGCGGCTGCGTGAGGTGAGCGGCGAGCAGGAGGAGCGCCGCAAGACGGGCATCGCCGAGTTCGACCGG
GTGCTGGGAGGCGGGGTGGTGGACGGCTCGCTGGTGCTGCTGGGAGGAGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GTCGGCGCTGGACAGGCTGGGCCGAGGAGGCCCGGTGCTGTACGTGTCGGGCGAGGAGTCGCTGCGGCAGACGAAGATGA
GGGCCGAGCGGCTGCGGGTGGAGAGCGCGGACATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTGACGGTGGCC
GAGGGCCTCAAGCCCCGGGCGCTGGTGGTGGACTCCATCCAGACGATGTACCTGCCGGAGCTGGGCAGCGCGCCGGGGAG
CATCTCGCAGGTAAGGGAGGTGGCGGGGCGCTTCATGGCCTTCGCCAAGCGCAGTGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCGATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAG
CGAGGCCACCCGTTCCGGATTTTGAGGGCGCACAAGAACCGCTTCGGCTCGACGAACGAGATTGGCGTCTTCGAGATGAA
GGGGGCGGGGCTGATGGAGGTGCCGGACCCCTCGGCGCTCTTCCTGGCCGAGCGCCCGGCGGGCAAGGCGGGCAGCGTGG
TGACGTGCACGCTCAATGGCACGAGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
CGGCGCACGGCGATTGGCGTGGATGGCAACCGGGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGACATCCCGCT
GGTGGGGTGCGACCTCTTCGTGAACGTGGCGGGAGGCATGCAGCTGTCGGAGCCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCCCTGGAGGCGCACACGCTGGTGCTGGGCGAGGTGGGCCTGGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTGGCCGAGGCGGCGAAGATGGGCTTCCAGCGGGCCATCATCCCCAAGGGGAG
CGCGAGGCGACTGGAGGACACGAAGCTGGAGGTGGTGGGCGTGGAGACGCTCTCCGAGGCCCTGGGAGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)

AAA domain (AAA_25)

(71-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.425

99.779

0.543
  radA Streptococcus mitis NCTC 12261

53.201

100

0.532
  radA Streptococcus pneumoniae Rx1

52.98

100

0.53
  radA Streptococcus pneumoniae D39

52.98

100

0.53
  radA Streptococcus pneumoniae R6

52.98

100

0.53
  radA Streptococcus pneumoniae TIGR4

52.98

100

0.53
  radA Streptococcus mitis SK321

52.759

100

0.528